Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36980 264 / 4e-81 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019346 [exp] 214 / 1e-62 AT4G36980 297 / 1e-95 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G138200 [exp] 300 / 4e-94 AT4G36980 491 / 7e-170 unknown protein Potri.007G044100 [exp] 298 / 9e-94 AT4G36980 489 / 3e-169 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09750 [flax] [poplar] DRY_EERY Alternative splicing regulator
Representative CDS sequence Show only first row Show all	>Lus10009350 pacid=23148873 polypeptide=Lus10009350 locus=Lus10009350.g ID=Lus10009350.BGIv1.0 annot-version=v1.0 ATGTGGCATGAAGCGAGGAGATCGGAACGGAAAGTCCATGACATGATGGACGCCGCTCGGAAGCGAGCGCAGAGGCGAGCTGTTTACTTGGCGAAGAGAA GAGGCGATCCGCAGCAATCTATTCAGGTCCTCGGAAATCGCTGCCGGATGTACCGCGATGATGGGCTATACCAAGCCAGTGAAGATCAGCAGGGATTGAT ACCTTGGAATGGGAAGGAGGACGTGCTCATAGACAGATTTGACGGCCGGGCGCTGCTAGATTTCATTCGGGAGGCTGGCTCTCGGAACTTCCGGCAGCCT GAGAAGTCGGAGGAGGAGGAAGAACTGGAAGAGTTTGTTAGTTTTGAGCGTTATCGGGATTTAATTAAGCTTCGGCGTAGAGGATGTCGGTACTTTTTTT CAAAATGTTCTGAACATCGCGTTGTTTTTTTGATTTACTTCTTAGTATCCAATTCCCAGATACGGCTGTTGTTCTACTGTTTACTGTGCATGTCATATTC TAGTGCTGAGTTTCTGTGGCTGGGTGATTTGGTTAAGACGTGTTGCTCAAAGTTCATTTGTGTGTATTTTACAGTGAATGATGAAGAGGGTTTGCGTCAT GTGATGCAAGAGATGGAAGCCAAGGCTATTGCTCCATTTATCGCCAACAGTAAGTCCCAGCAGTCGCAGACTCCTGCTAATAAGGGTACATATTCTCAAG TGGGTTTCTCTTACAATGGCCATGGGAAAGCGGAGGACAAGGTATCAGATGATGATGCTGAAGATGATGACGAAGATGATGATGACGATGAAGATGATGA CTTTAACAGTGATGACAGCAGCGATGAAGGGGTAGATGTAATTGCAAAGGAATTTGGAGTGAAACGGTTTGGGTGGCTTGTGTATATGGATAAAAAGGCA AAAGAAGAGGAGAAGAGGCAAAAGGAAGTAATCAAAGGAGATCCTGCAATAAGGAAGTTGAGTCGCAAGGAAAGACGGAAAGCTTCTCAAATAGAAAGAG AAAAAGAGAGGGAAGCTGCTAGAATCACGGGGACCAGGTTGCTGCGTCATGATCCCTACCGAGAGTCTAGAAGAAGCCCAACCTATGAAGACTATTCTCG CTCTAGAAGATCAAAGTCACGGTCCTACTCTCCATCACACTCCAGGCGTCACGCTCGTGGTGGTCAACATGATGACGTTCATCGCAGCAAACCGAAGAGT CCTAAGATTGAATATATTACTGAATTTGGGGGCTCTGCTAATGTGGAAGAGCCGAAGTTTGGAAGATATTCTCCACCATCATCTCCCTCGTCCCGGACTG AGTTGGCGAACCGGCCATCATCTGGTCTTATACTCGAGGCACTTCATGTTGATCCAGCATCTGGTCTATCTCTCGACAAGGATAAACCTGCCAAAGAGTT GAAACCTTCTGTAAGCAGTTCCTTAGGGTTGTCAAAGCTAAGCAAAGCAAGTGCTTCTGGGGGAATAATAAAGCAGCAGCAAAAGGAGAAGAAGGAAACT CCTCAGGAAAGACTTAAAAGGATTATGAACACGCAGTTAAATAAACAGATTAAGAAGGACACTGTTGCCGAAACGGCTAAGAAAAGAGAACAAGAGCGAT TAAGGCTAGAGAAGTTAGCAGAAACCAGCCGAATTAGTCGTTATAGGCGGCGTAGCCGTAGCAGGAGCTACAGCCCCGAACAAGACACCGAAGCAGCAGG AGTCGGAGTCGAAGTAGGAGTAGGAGTTCCCGCAGGCATCATTCGCGATCCCGGTCACCTGCACGATCTCGGTCTCGTTCCCCGTCCAACTCCCGCTCGC CTAGGTGATGAATGA
AA sequence Show only first row Show all	>Lus10009350 pacid=23148873 polypeptide=Lus10009350 locus=Lus10009350.g ID=Lus10009350.BGIv1.0 annot-version=v1.0 MWHEARRSERKVHDMMDAARKRAQRRAVYLAKRRGDPQQSIQVLGNRCRMYRDDGLYQASEDQQGLIPWNGKEDVLIDRFDGRALLDFIREAGSRNFRQP EKSEEEEELEEFVSFERYRDLIKLRRRGCRYFFSKCSEHRVVFLIYFLVSNSQIRLLFYCLLCMSYSSAEFLWLGDLVKTCCSKFICVYFTVNDEEGLRH VMQEMEAKAIAPFIANSKSQQSQTPANKGTYSQVGFSYNGHGKAEDKVSDDDAEDDDEDDDDDEDDDFNSDDSSDEGVDVIAKEFGVKRFGWLVYMDKKA KEEEKRQKEVIKGDPAIRKLSRKERRKASQIEREKEREAARITGTRLLRHDPYRESRRSPTYEDYSRSRRSKSRSYSPSHSRRHARGGQHDDVHRSKPKS PKIEYITEFGGSANVEEPKFGRYSPPSSPSSRTELANRPSSGLILEALHVDPASGLSLDKDKPAKELKPSVSSSLGLSKLSKASASGGIIKQQQKEKKET PQERLKRIMNTQLNKQIKKDTVAETAKKREQERLRLEKLAETSRISRYRRRSRSRSYSPEQDTEAAGVGVEVGVGVPAGIIRDPGHLHDLGLVPRPTPAR LGDE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36980			unknown protein		Lus10009350 [exp]	0	1
AT5G09880			Splicing factor, CC1-like (.1)		Lus10002093 [exp]	2.8	0.8681
AT5G51230	C2H2ZnF	AtEMF2, CYR1, V...	CYTOKININ RESISTANT 1, EMBRYON...		Lus10042997 [exp]	7.3	0.8535
AT3G61600		ATPOB1	POZ/BTB containin G-protein 1 ...		Lus10028744 [exp]	7.7	0.8772
AT1G79610		ATNHX6	Na+/H+ antiporter 6, ARABIDOPS...		Lus10039131 [exp]	7.7	0.8929
AT4G02715			unknown protein		Lus10014679 [exp]	11.7	0.8554
					Lus10017572 [exp]	12.2	0.8428
AT4G19890			Pentatricopeptide repeat (PPR-...		Lus10000428 [exp]	12.6	0.8217
AT5G41880		POLA4, POLA3	DNA primases;DNA primases (.1)		Lus10006088 [exp]	12.8	0.8261
AT3G46590		ATTRP2, TRFL1	TRF-like 1 (.1.2.3)		Lus10016527 [exp]	12.8	0.8806
AT5G09880			Splicing factor, CC1-like (.1)		Lus10000826 [exp]	16.5	0.8217

Compare expression of checked genes

Lus10009350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.