Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37000 275 / 3e-91 ATRCCR, ACD2 ARABIDOPSIS THALIANA RED CHLOROPHYLL CATABOLITE REDUCTASE, accelerated cell death 2 (ACD2) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019349 [exp] 496 / 2e-175 AT4G37000 289 / 4e-94 ARABIDOPSIS THALIANA RED CHLOROPHYLL CATABOLITE REDUCTASE, accelerated cell death 2 (ACD2) (.1) Lus10017952 [exp] 81 / 7e-19 AT4G37000 59 / 1e-11 ARABIDOPSIS THALIANA RED CHLOROPHYLL CATABOLITE REDUCTASE, accelerated cell death 2 (ACD2) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G043600 [exp] 340 / 8e-117 AT4G37000 292 / 5e-98 ARABIDOPSIS THALIANA RED CHLOROPHYLL CATABOLITE REDUCTASE, accelerated cell death 2 (ACD2) (.1) Potri.007G043700 [exp] 230 / 8e-74 AT4G37000 206 / 3e-64 ARABIDOPSIS THALIANA RED CHLOROPHYLL CATABOLITE REDUCTASE, accelerated cell death 2 (ACD2) (.1) Potri.007G043500 [exp] 209 / 2e-66 AT4G37000 178 / 1e-54 ARABIDOPSIS THALIANA RED CHLOROPHYLL CATABOLITE REDUCTASE, accelerated cell death 2 (ACD2) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06405 [flax] [poplar] RCC_reductase Red chlorophyll catabolite reductase (RCC reductase)
Representative CDS sequence Show only first row Show all	>Lus10009352 pacid=23148898 polypeptide=Lus10009352 locus=Lus10009352.g ID=Lus10009352.BGIv1.0 annot-version=v1.0 ATGGCTGTCAGCATCACCTCATCTTCACTCTTCTTCTTTCCTCCTAAATCTCTTCCATTCCCTTCCCCTTCTTCCCCTTCATTCAATCCTCCTCCGACCA CCAAACCAACCGTAATTGCTCTTTCTTCACTCTCGTCCCAAATGTCCTCCGACGAAGTACCCCGCTACAAATTCATGGAGTTCCCCTTCGTCTCCCAGCC TCACAGAGACGCCATGGTCGATCTAGTCTCCACCGTTGAGGATTGCCTCGGATCGGACCACCTCCTCCCTCCAACTCTCCCACCCGACGTCCAGTACTGC CGCAACGACTCCGGCGGAGCCCACGCCTCCCTCCACATCCGCCCCGGCCGCGATTCCTCTCCGGTGGATTTCATATTAGGAAGCTGGCTACACTGCAAGC TACCAACAGGTTCATCACTCAACATAACAAGCCTCTCAGCCTACCTAAACACATCAACAGACGCCCCGAACCTCCTCCTCGAGCTAATCCAAACCACTCC GAAATCCCTAATCTTCATCCTCGACTTACCCCCTCGAAAAGACCCCGTGTCCAATCCCTCTTACCTCCACGAATTCTACGAATCCACCAAGCTCGACTCC CACAGGGAGGCGCTGCACAGCCTCCCTGAGGTGAAGTCTTACTTCTCGTCCTCGCTCTACCTACGGAGCGTCCTGTCCCCCACCGCGATCATTGTTAGGA TCGAGGCGGAAGATGCTGGCCGGATCGAGGAGATCTTGGTTGGGAGTGTGCATAAGGTGGCTAAGGAAGTTGTGGGTTTGTGGCTGGAGAAGTGTGTGTT TAGGGAAGAGAAGAAAGAGATGGGGGAGGAGGAAGTTGAGTGGTTGAAGAAGAGGGATAGTTTGGTTAAGGGGAAAACGATCGAGATCGATTTGGGTTCG AATTTTCCGAGGCTGTTCGGGGATGAGGTTGCTGAGAGGTTGTTGAGTGCTGTAAGAATGTATTATAAGGCGTAA
AA sequence Show only first row Show all	>Lus10009352 pacid=23148898 polypeptide=Lus10009352 locus=Lus10009352.g ID=Lus10009352.BGIv1.0 annot-version=v1.0 MAVSITSSSLFFFPPKSLPFPSPSSPSFNPPPTTKPTVIALSSLSSQMSSDEVPRYKFMEFPFVSQPHRDAMVDLVSTVEDCLGSDHLLPPTLPPDVQYC RNDSGGAHASLHIRPGRDSSPVDFILGSWLHCKLPTGSSLNITSLSAYLNTSTDAPNLLLELIQTTPKSLIFILDLPPRKDPVSNPSYLHEFYESTKLDS HREALHSLPEVKSYFSSSLYLRSVLSPTAIIVRIEAEDAGRIEEILVGSVHKVAKEVVGLWLEKCVFREEKKEMGEEEVEWLKKRDSLVKGKTIEIDLGS NFPRLFGDEVAERLLSAVRMYYKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37000		ATRCCR, ACD2	ARABIDOPSIS THALIANA RED CHLOR...		Lus10009352 [exp]	0	1
AT1G14345			NAD(P)-linked oxidoreductase s...		Lus10037201 [exp]	2.0	0.9596
AT4G32260		PDE334	PIGMENT DEFECTIVE 334, ATPase,...		Lus10041039 [exp]	2.0	0.9626
AT5G42070			unknown protein		Lus10023063 [exp]	3.9	0.9588
AT1G29700			Metallo-hydrolase/oxidoreducta...		Lus10035042 [exp]	5.5	0.9378
AT4G14615			unknown protein		Lus10006639 [exp]	5.5	0.9467
AT4G32260		PDE334	PIGMENT DEFECTIVE 334, ATPase,...		Lus10006188 [exp]	5.7	0.9548
AT2G32300		UCC1	uclacyanin 1 (.1)		Lus10010484 [exp]	6.3	0.9079
AT4G38225			unknown protein		Lus10013843 [exp]	6.5	0.9347
AT2G33855			unknown protein		Lus10013983 [exp]	6.6	0.9377
AT4G09650		PDE332, ATPD	PIGMENT DEFECTIVE 332, ATP syn...		Lus10012452 [exp]	7.1	0.9482

Compare expression of checked genes

Lus10009352 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.