Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50360 249 / 2e-84 CEN1, ATCEN2 CENTRIN 1, centrin2 (.1) AT4G37010 192 / 5e-62 CEN2 centrin 2 (.1.2) AT5G37780 121 / 2e-34 ACAM-1, TCH1, CAM1 TOUCH 1, calmodulin 1 (.1.2.3) AT1G66410 121 / 2e-34 ACAM-4, CAM4 calmodulin 4 (.1.2) AT3G56800 119 / 1e-33 ACAM-3, CAM3 calmodulin 3 (.1) AT2G27030 119 / 1e-33 CAM5, CAM2, ACAM-2, ACAM-5 calmodulin 5 (.1.2.3) AT2G41110 119 / 1e-33 ACAM-2, ATCAL5, CAM2 calmodulin 2 (.1.2) AT3G43810 119 / 2e-33 CAM7 calmodulin 7 (.1) AT5G21274 117 / 5e-33 ACAM-6, CAM6 calmodulin 6 (.1) AT3G22930 113 / 7e-31 CML11 calmodulin-like 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019349 [exp] 304 / 3e-101 AT4G37000 289 / 4e-94 ARABIDOPSIS THALIANA RED CHLOROPHYLL CATABOLITE REDUCTASE, accelerated cell death 2 (ACD2) (.1) Lus10041288 [exp] 119 / 2e-33 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10037423 [exp] 119 / 2e-33 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10038981 [exp] 119 / 2e-33 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10027283 [exp] 119 / 2e-33 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10039391 [exp] 115 / 6e-32 AT4G14640 268 / 1e-93 calmodulin-like 8, calmodulin 8 (.1) Lus10021487 [exp] 106 / 2e-28 AT2G41110 255 / 1e-88 calmodulin 2 (.1.2) Lus10022589 [exp] 102 / 7e-27 AT3G43810 255 / 2e-88 calmodulin 7 (.1) Lus10009176 [exp] 94 / 2e-23 AT2G27030 186 / 3e-61 calmodulin 5 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G138000 [exp] 260 / 1e-88 AT3G50360 275 / 4e-96 CENTRIN 1, centrin2 (.1) Potri.001G222200 [exp] 120 / 2e-33 AT2G27030 304 / 6e-107 calmodulin 5 (.1.2.3) Potri.009G021500 [exp] 119 / 2e-33 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.006G026700 [exp] 119 / 2e-33 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.012G041000 [exp] 119 / 2e-33 AT5G37780 283 / 9e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.016G024700 [exp] 119 / 2e-33 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.015G032600 [exp] 117 / 6e-33 AT5G37780 284 / 3e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.008G159300 [exp] 112 / 9e-31 AT3G22930 235 / 1e-80 calmodulin-like 11 (.1) Potri.010G080900 [exp] 111 / 2e-30 AT4G14640 270 / 2e-94 calmodulin-like 8, calmodulin 8 (.1) Potri.005G052800 [exp] 106 / 2e-28 AT4G14640 228 / 7e-78 calmodulin-like 8, calmodulin 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10009353 pacid=23148908 polypeptide=Lus10009353 locus=Lus10009353.g ID=Lus10009353.BGIv1.0 annot-version=v1.0 ATGTCGACTCTTTATAGAGGAGTATCTAGGAAGGATAATAAACCCCGATCTCGCCATCACGGTGGATTAACCCAGCAGAAGAAGCAGGAGATCAAGGAGG CATTCGATCTCTTCGACACCGATGGCTCCGGTACTATTGATGCTAAGGAGCTGAATGTCGCCATGAGGGCTCTTGGATTCGAAATGACAGAAGAGCAAAT CACTCAAATGATTGCTGACGTGGACAAGGACGGGAGTGGTGCGATCGACTTCGACGAGTTCGTACACATGATGACTGCGAAAATCGGAGAGAGGGACACC AAGGAAGAGCTCATGAAAGCGTTCCGGATTATCGACAACGATAAAAATGGGAAGATATCTATGGATGACATCAAGCGAATAGCAAAGGAGCTCGGCGAGA GCTTCACTGACAGAGAGATCCAAGAGATGGTCGATGAAGCTGACCGCGATCGAATGAAGCTCGATTTCTCCCAGCTGTTAACACAATGCCATAACGCCAA CAACATTAAGTCCTTGCTGTCGATTCTCATATCGACAGGCCGAATCCGTCGCAGGCATTTCGTCGAACAGTTTCTGGGCACATGTTTCCGCTCGAATGCT CCAGATTTGGCTCTCACAACTTTCACTGCTTTCAACAAAGAAGGAACTGTTTCCCTTCAGAATTTGATGCTCAGAGGTCTCGGCTGTAACTTTCTATACA CATTGAGTAAAAAATGTTTGTGGCCAGGTAGAAAAGTGAAGAAGTCTCAATTTTGCAGGGTTTACAAGAATACAAAGAATTTGTTTGAATGA
AA sequence Show only first row Show all	>Lus10009353 pacid=23148908 polypeptide=Lus10009353 locus=Lus10009353.g ID=Lus10009353.BGIv1.0 annot-version=v1.0 MSTLYRGVSRKDNKPRSRHHGGLTQQKKQEIKEAFDLFDTDGSGTIDAKELNVAMRALGFEMTEEQITQMIADVDKDGSGAIDFDEFVHMMTAKIGERDT KEELMKAFRIIDNDKNGKISMDDIKRIAKELGESFTDREIQEMVDEADRDRMKLDFSQLLTQCHNANNIKSLLSILISTGRIRRRHFVEQFLGTCFRSNA PDLALTTFTAFNKEGTVSLQNLMLRGLGCNFLYTLSKKCLWPGRKVKKSQFCRVYKNTKNLFE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50360		CEN1, ATCEN2	CENTRIN 1, centrin2 (.1)		Lus10009353 [exp]	0	1
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10024638 [exp]	2.8	0.8655
AT2G37195			unknown protein		Lus10023187 [exp]	4.7	0.8344
AT2G23090			Uncharacterised protein family...		Lus10019287 [exp]	6.9	0.8251
AT2G35795			Chaperone DnaJ-domain superfam...		Lus10041420 [exp]	9.8	0.8425
AT3G13970		APG12B, APG12	AUTOPHAGY 12 B, AUTOPHAGY 12, ...		Lus10000432 [exp]	10.1	0.8543
AT4G32960			unknown protein		Lus10007456 [exp]	14.4	0.8514
AT1G12390			Cornichon family protein (.1)		Lus10009295 [exp]	14.8	0.8168
AT3G19460			Reticulon family protein (.1.2...		Lus10019812 [exp]	14.9	0.8453
AT1G12390			Cornichon family protein (.1)		Lus10006997 [exp]	19.4	0.8258
AT1G62310			transcription factor jumonji (...		Lus10002052 [exp]	21.3	0.7693

Compare expression of checked genes

Lus10009353 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.