Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31420 57 / 2e-10 B3 Domain of unknown function (DUF313) (.1) AT2G27410 51 / 3e-08 B3 Domain of unknown function (DUF313) (.1) AT2G32645 45 / 2e-06 Domain of unknown function (DUF313) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027272 [exp] 191 / 2e-62 AT2G27410 66 / 9e-13 Domain of unknown function (DUF313) (.1) Lus10027284 [exp] 192 / 2e-61 AT2G27410 67 / 2e-12 Domain of unknown function (DUF313) (.1) Lus10038980 [exp] 189 / 3e-60 AT2G27410 69 / 3e-13 Domain of unknown function (DUF313) (.1) Lus10015934 [exp] 83 / 7e-20 AT2G27410 48 / 3e-06 Domain of unknown function (DUF313) (.1) Lus10035393 [exp] 80 / 1e-19 AT2G27410 68 / 4e-14 Domain of unknown function (DUF313) (.1) Lus10030996 [exp] 83 / 2e-19 AT2G27410 63 / 3e-11 Domain of unknown function (DUF313) (.1) Lus10035394 [exp] 78 / 1e-18 AT2G27410 61 / 1e-11 Domain of unknown function (DUF313) (.1) Lus10030994 [exp] 75 / 2e-16 AT2G27410 60 / 4e-10 Domain of unknown function (DUF313) (.1) Lus10027287 [exp] 51 / 2e-08 AT2G31420 47 / 1e-06 Domain of unknown function (DUF313) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G014200 [exp] 39 / 0.0006 AT3G24850 73 / 2e-14 Domain of unknown function (DUF313) (.1) Potri.015G014700 [exp] 39 / 0.0006 AT3G24850 75 / 8e-15 Domain of unknown function (DUF313) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009354 pacid=23148902 polypeptide=Lus10009354 locus=Lus10009354.g ID=Lus10009354.BGIv1.0 annot-version=v1.0 ATGCAACATTGTCTTTCGATCCCTAGGACGAAGATTGCGAACGAGATTTTGACGGATGGAGAGAAGAGGGAACTGGACGCGGCTAGGAAAACCAAGATTG GGTGTTTTGTAGATCCGGATATGGAGGTTTCGCATCAAGTGTCGTTGAGGAGGTGGGGGGTGGACATGGAAAACATCTTCGGACAAGGATGGAAGAAGTT GCTGACGAAGCAATGGCGCAACCTTATTGATCTTGCTGAAAACGATGTGGTGGAGCTCTGGAGTTTCTGGTCCCCTTCAGGGGAGCTCTGTTTTGTACTG GTTACTTTGAAAGCAAGGCAAGCTGCTGCTGACAAGGAACACCAAGGATTAATGATGACTCGAGAAGAAGAAGAAAGCCATCTTCAGATTGTGTCTATCG GCTACTGCCCTCATATTGATTTGACTCTTAAACTCTAA
AA sequence Show only first row Show all	>Lus10009354 pacid=23148902 polypeptide=Lus10009354 locus=Lus10009354.g ID=Lus10009354.BGIv1.0 annot-version=v1.0 MQHCLSIPRTKIANEILTDGEKRELDAARKTKIGCFVDPDMEVSHQVSLRRWGVDMENIFGQGWKKLLTKQWRNLIDLAENDVVELWSFWSPSGELCFVL VTLKARQAAADKEHQGLMMTREEEESHLQIVSIGYCPHIDLTLKL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31420	B3		Domain of unknown function (DU...		Lus10009354 [exp]	0	1
					Lus10038177 [exp]	3.5	0.7303
AT5G20230		SAG14, ATBCB	SENESCENCE ASSOCIATED GENE 14,...		Lus10025752 [exp]	5.7	0.7236
AT4G34850		LAP5	LESS ADHESIVE POLLEN 5, Chalco...		Lus10042388 [exp]	6.3	0.7211
AT2G01770		ATVIT1, VIT1	vacuolar iron transporter 1 (....		Lus10034583 [exp]	6.5	0.7550
AT5G59600			Tetratricopeptide repeat (TPR)...		Lus10040779 [exp]	8.3	0.6792
AT3G55400		OVA1	OVULE ABORTION 1, methionyl-tR...		Lus10001706 [exp]	15.0	0.6594
AT5G61890	AP2_ERF		Integrase-type DNA-binding sup...		Lus10006796 [exp]	19.9	0.6679
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10009072 [exp]	24.9	0.6404
AT3G01570			Oleosin family protein (.1)		Lus10028035 [exp]	34.5	0.5571
AT1G18190		GC2	golgin candidate 2 (.1)		Lus10009060 [exp]	44.1	0.7029

Compare expression of checked genes

Lus10009354 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.