Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30740 58 / 5e-11 FAD-binding Berberine family protein (.1) AT1G11770 55 / 5e-10 FAD-binding Berberine family protein (.1) AT5G44400 51 / 9e-09 FAD-binding Berberine family protein (.1) AT1G01980 51 / 1e-08 ATSEC1A FAD-binding Berberine family protein (.1) AT2G34790 50 / 2e-08 MEE23, EDA28 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) AT4G20820 49 / 4e-08 FAD-binding Berberine family protein (.1) AT5G44380 49 / 7e-08 FAD-binding Berberine family protein (.1) AT1G30760 49 / 8e-08 FAD-binding Berberine family protein (.1) AT1G30700 49 / 8e-08 FAD-binding Berberine family protein (.1) AT4G20830 49 / 9e-08 FAD-binding Berberine family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023363 [exp] 101 / 2e-26 AT2G34790 504 / 1e-175 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10038442 [exp] 95 / 3e-24 AT5G44390 389 / 8e-132 FAD-binding Berberine family protein (.1) Lus10038436 [exp] 60 / 8e-12 AT4G20820 508 / 1e-176 FAD-binding Berberine family protein (.1) Lus10012641 [exp] 58 / 4e-11 AT5G44440 518 / 2e-180 FAD-binding Berberine family protein (.1) Lus10038439 [exp] 54 / 1e-09 AT1G30700 540 / 0.0 FAD-binding Berberine family protein (.1) Lus10038445 [exp] 52 / 5e-09 AT1G30760 415 / 6e-141 FAD-binding Berberine family protein (.1) Lus10021289 [exp] 52 / 9e-09 AT1G26380 486 / 4e-168 FAD-binding Berberine family protein (.1) Lus10041290 [exp] 51 / 1e-08 AT2G34790 375 / 8e-126 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10038437 [exp] 50 / 3e-08 AT1G26380 484 / 2e-167 FAD-binding Berberine family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G158600 [exp] 66 / 5e-14 AT1G30760 499 / 5e-173 FAD-binding Berberine family protein (.1) Potri.011G161400 [exp] 61 / 5e-12 AT1G30760 616 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G161500 [exp] 60 / 1e-11 AT1G30760 632 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G161800 [exp] 59 / 1e-11 AT5G44360 550 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G161300 [exp] 59 / 1e-11 AT1G30760 624 / 0.0 FAD-binding Berberine family protein (.1) Potri.006G128900 [exp] 59 / 2e-11 AT1G30760 638 / 0.0 FAD-binding Berberine family protein (.1) Potri.012G034700 [exp] 59 / 2e-11 AT1G30760 571 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158300 [exp] 59 / 3e-11 AT1G30700 616 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462700 [exp] 59 / 3e-11 AT1G30760 525 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G159600 [exp] 58 / 4e-11 AT1G30760 642 / 0.0 FAD-binding Berberine family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009356 pacid=23148878 polypeptide=Lus10009356 locus=Lus10009356.g ID=Lus10009356.BGIv1.0 annot-version=v1.0 ATGACGGAGATACACCTGACGAAATCTTCCGCAAGAGGAGGAAGGAAGATAAGGTCTTCTTCAGCTGTCAACAACAACCAATCCCAAGTAGTCCTCATTC CCGCAAGCTCCCCGCTTTACTCCTCCGTCCCGAACTCTTCGATTCGAAACCTCAGGTTCACCAACGCCTCAGGATTCTCGAAACCGACATTCATAGTCGT TCCATACGAGCAATCCCACGTCCAGACGGTGGTGATTTGCGTCAAGAATTCCGGTTCGCAAGTCCGGACGAGGAGTGGAGGCTACGACTACGAGCAGGGG CGGAACTAG
AA sequence Show only first row Show all	>Lus10009356 pacid=23148878 polypeptide=Lus10009356 locus=Lus10009356.g ID=Lus10009356.BGIv1.0 annot-version=v1.0 MTEIHLTKSSARGGRKIRSSSAVNNNQSQVVLIPASSPLYSSVPNSSIRNLRFTNASGFSKPTFIVVPYEQSHVQTVVICVKNSGSQVRTRSGGYDYEQG RN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20830			FAD-binding Berberine family p...		Lus10009356 [exp]	0	1
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10039864 [exp]	12.8	0.8433
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Lus10035498 [exp]	15.6	0.8328
AT1G75720			Plant protein of unknown funct...		Lus10024335 [exp]	17.4	0.8359
AT5G24620			Pathogenesis-related thaumatin...		Lus10032914 [exp]	29.6	0.8328
AT5G36930			Disease resistance protein (TI...		Lus10004726 [exp]	34.1	0.8283
					Lus10018627 [exp]	35.3	0.8096
AT5G24620			Pathogenesis-related thaumatin...		Lus10015591 [exp]	36.7	0.8228
AT2G30540			Thioredoxin superfamily protei...		Lus10040899 [exp]	37.8	0.8222
AT3G18670			Ankyrin repeat family protein ...		Lus10035567 [exp]	37.9	0.8219
AT1G35670		CPK11, ATCDPK2,...	calcium-dependent protein kina...		Lus10014820 [exp]	41.1	0.8006

Compare expression of checked genes

Lus10009356 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.