Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67020 82 / 4e-19 unknown protein AT3G50340 58 / 1e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019345 [exp] 181 / 1e-59 AT5G67020 248 / 2e-82 unknown protein Lus10011589 [exp] 42 / 3e-05 AT2G22790 166 / 4e-48 unknown protein Lus10011575 [exp] 42 / 4e-05 AT2G22790 160 / 8e-46 unknown protein Lus10019249 [exp] 42 / 5e-05 AT5G67020 141 / 2e-38 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G044200 [exp] 94 / 1e-23 AT5G67020 537 / 0.0 unknown protein Potri.005G138300 [exp] 93 / 2e-23 AT5G67020 520 / 0.0 unknown protein Potri.007G008900 [exp] 43 / 2e-05 AT2G22790 153 / 2e-43 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009357 pacid=23148909 polypeptide=Lus10009357 locus=Lus10009357.g ID=Lus10009357.BGIv1.0 annot-version=v1.0 ATGGGGAGATCTAACGCTGATCGGAGGTGGTGGGAGTTCGGGGAGCGCCAGTTTGGGAATCCCGGGCCGACGGGGAGGCCAGCGGAGAGTACGGCGCGGA GGTCGGGAGGGAAGGAAAATCCGAATTGGGCCTCGATTCGGGCGAACTCCGGGTCGGATAGGCCCGGGTGGACTTTGACGGAGGAGGATTGGAGGTGGGT GATGACTTTGTTGGCTAGTGGGGAGAAAGAGATGAGGCTGTTGCGGGATGAGGTGGTAGGGGTGGCGGAAGCGGGGGTGTGGGGGTCGGGAGCGGTGGAT CTAGCGGAGAGGCGGCGGAGGCCGGCTATGTGGGCTGGGTTCAGGCCGGTCATTCGCCGGTCGACGTCGACCATTGTTGTGGGCGGAGATTAG
AA sequence Show only first row Show all	>Lus10009357 pacid=23148909 polypeptide=Lus10009357 locus=Lus10009357.g ID=Lus10009357.BGIv1.0 annot-version=v1.0 MGRSNADRRWWEFGERQFGNPGPTGRPAESTARRSGGKENPNWASIRANSGSDRPGWTLTEEDWRWVMTLLASGEKEMRLLRDEVVGVAEAGVWGSGAVD LAERRRRPAMWAGFRPVIRRSTSTIVVGGD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10009357 [exp]	0	1
					Lus10034961 [exp]	1.0	0.9062
AT1G03390			HXXXD-type acyl-transferase fa...		Lus10033079 [exp]	2.0	0.8849
					Lus10042276 [exp]	3.2	0.8185
					Lus10032433 [exp]	3.9	0.8645
AT5G55490		GEX1, ATGEX1	gamete expressed protein 1 (.1...		Lus10039900 [exp]	6.0	0.8166
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10032911 [exp]	6.9	0.8304
					Lus10013473 [exp]	8.1	0.7776
AT1G78270		ATUGT85A4	UDP-glucosyl transferase 85A4 ...		Lus10037117 [exp]	8.8	0.7818
					Lus10038255 [exp]	8.8	0.8018
AT1G02010		SEC1A	secretory 1A (.1.2)		Lus10015870 [exp]	11.1	0.7356

Compare expression of checked genes

Lus10009357 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.