Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32250 637 / 0 Protein kinase superfamily protein (.1.2.3) AT5G13530 119 / 2e-27 KEG KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) AT4G38470 86 / 2e-17 STY46 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) AT2G17700 79 / 3e-15 STY8 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) AT3G01490 76 / 2e-14 Protein kinase superfamily protein (.1) AT5G50000 75 / 4e-14 Protein kinase superfamily protein (.1) AT4G14780 70 / 1e-12 Protein kinase superfamily protein (.1) AT3G22750 68 / 5e-12 Protein kinase superfamily protein (.1) AT5G01850 67 / 1e-11 Protein kinase superfamily protein (.1) AT5G58950 67 / 1e-11 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019343 [exp] 1097 / 0 AT4G32250 627 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10002923 [exp] 635 / 0 AT4G32250 716 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10001499 [exp] 619 / 0 AT4G32250 708 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10039491 [exp] 117 / 6e-27 AT5G13530 2343 / 0.0 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10012517 [exp] 85 / 6e-17 AT4G35780 754 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10022653 [exp] 82 / 3e-16 AT4G38470 673 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10023989 [exp] 81 / 1e-15 AT4G38470 771 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10025092 [exp] 81 / 2e-15 AT1G78610 779 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10042129 [exp] 79 / 2e-15 AT5G50000 657 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G255700 [exp] 721 / 0 AT4G32250 828 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.018G026400 [exp] 713 / 0 AT4G32250 809 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.001G029600 [exp] 109 / 2e-24 AT5G13530 2587 / 0.0 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Potri.001G274900 [exp] 107 / 1e-23 AT5G13530 1856 / 0.0 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Potri.004G179100 [exp] 97 / 3e-21 AT4G35780 612 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.009G139400 [exp] 95 / 3e-20 AT4G38470 807 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179514 [exp] 91 / 4e-19 AT4G38470 786 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179457 [exp] 91 / 4e-19 AT4G38470 654 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.005G106200 [exp] 86 / 2e-17 AT4G35780 821 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.007G060600 [exp] 82 / 5e-16 AT4G35780 793 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10009358 pacid=23148913 polypeptide=Lus10009358 locus=Lus10009358.g ID=Lus10009358.BGIv1.0 annot-version=v1.0 ATGGAGAAGCCGATCAAACTGAGGCCTACTGCTTCATTCGAGTATGAGCTATTCGACGGAGATCCTGACCATCTGAGGACAGTTGTTGCTACACCTACGC AGACTGTGCCGTGGATTAATCCTTCTGAGTTGAAGTTCAAGCACAGGATTGGGCGAGGGACGTTTGGTGATGTTTGGTTAGCAACGCACCATCAGTCTGC CGATGATTTTGATGAGTACCATGAAGTGGCTGTGAAGATGCTACACCCGCTGAAGGAGGGTCTTGGACAGAGATTTGTGGAGAATTTCGAAGGGCTGTTC TTGAGGATGCGAGAACTCCAAGGTGTCTGTTGGTTGCATGGTATCTCAAAGATTAATGGCAGGATTTGCATTGCAATGAAAATGTACGAGGAATCAGTTG CTGATCAGATTGCTAGGTCAAAAGGTGGCAAGCTCAAACTACCAGACGTCTTGAGATACGGTATTGACTTGGCCAAAGCAATCCTACAGCTGCACTCACT TGGTCTGCTGCTATTGAATGTTAAACCTTCGAACTTCCTTCTTGATGAGCGTGATCAGCTGGTCCTTGGTGATTTTGGCATTCCTTTCCTTCTCCTTGGG ATACCTTTGCTGAACTCTGATGTGGTTTTGAGACTTGGAACTCCAAGTTCCATGGCCCCAGAACAATGGGAACCGGAAGCAAGAGGTCCTCTATGCCTGG AAACTGATTCTTGGGGTTTTGGATGTAGCATATTGGAGATGCTGACTGGGACTCAACCTTGGTTTGGGAAATCATCTCATGAAATATATAAAGCTGTTGT ACTCAAGCAACAGAAGCCATCCATTCCAAATGGCTTACCTCCCGCTGTAGAAAATGTTATTTATGGCTGCTTTGAGTATGATCCACGCAACCGACCTCTA ATGGATGATATCCTAGCTGCATTTGAGAGTTCACACAATGCCGTTCAAGGCGATGAAGGATGGATTAGTCTGGACAGTAGAAAAGCAGTTTCTCAGAAAT CACCCATTGATGGCTACACGAACTGGTTTCTATCAAAAGACGATCTCCAAATGAATGACACAGTCCGTTCAAGAAAACCTTCAACCGCACAAAAGCCGCA GACCGTTGCTGTCCCGAAAGGAACAGTTGTAGGCAAAGAAACTGACAAAAATGGCTTTGTTCTGGTAAAAATCTCTGGGGTAAACAACCCTCTGAAGGTC CAGGAGTCAACTCTGGAAAGGGTCACGCTGGGTTTCGCAGCTGGAGACTGGGTTCGCCTAAAGGATGAAATTGTCAATCACTCTCGAGTCGGCATCCTGC ACACCATCAAACGTAACGGACGAGTAACCGTCGGATTTGCTGGCCGGGAAATCCTCTGGATGGGAGACATATCCAAGCTTGAAGTAATGGAACCGTACTA TCAAGGCCAATTCGTACGAGTAAAGGCAGACGTTGCTACTCCCCGGTTCGAGTGGCCTCGCAAAGGAGGAACCCTCTGGGCCACAGGAAGGATTTCCCGA GTACTCCCCAATGGATGTCTTGTAGTCAGCTTCCCAGGACGTTTTACATTCAAAGACGAGGCAAAATACTTCTTAGCCGATCCGGCTCAAGTTGAAGTTG TGACGTTCAATACATGCCCTGGACTTGTTGAGAAGTACCAGCATGTTGAAGATTTCCACTGGGCTATTCGACCGTTAACTATTGCGCTGGGTGCATTCAC TGCTATGAAGCTCGGGATATCTGCAGGTCGGGCTGTTAGCTCAAAACTGAACAAGGCACCGAAATCGGAGGAGAATAAGGCCGGCAACAAGACCGATTGG CTTCCACAATCCGTTGCAAATGTGATATTCAAGGACGGGCTTGCAACCACCACCACCGTCAGATGA
AA sequence Show only first row Show all	>Lus10009358 pacid=23148913 polypeptide=Lus10009358 locus=Lus10009358.g ID=Lus10009358.BGIv1.0 annot-version=v1.0 MEKPIKLRPTASFEYELFDGDPDHLRTVVATPTQTVPWINPSELKFKHRIGRGTFGDVWLATHHQSADDFDEYHEVAVKMLHPLKEGLGQRFVENFEGLF LRMRELQGVCWLHGISKINGRICIAMKMYEESVADQIARSKGGKLKLPDVLRYGIDLAKAILQLHSLGLLLLNVKPSNFLLDERDQLVLGDFGIPFLLLG IPLLNSDVVLRLGTPSSMAPEQWEPEARGPLCLETDSWGFGCSILEMLTGTQPWFGKSSHEIYKAVVLKQQKPSIPNGLPPAVENVIYGCFEYDPRNRPL MDDILAAFESSHNAVQGDEGWISLDSRKAVSQKSPIDGYTNWFLSKDDLQMNDTVRSRKPSTAQKPQTVAVPKGTVVGKETDKNGFVLVKISGVNNPLKV QESTLERVTLGFAAGDWVRLKDEIVNHSRVGILHTIKRNGRVTVGFAGREILWMGDISKLEVMEPYYQGQFVRVKADVATPRFEWPRKGGTLWATGRISR VLPNGCLVVSFPGRFTFKDEAKYFLADPAQVEVVTFNTCPGLVEKYQHVEDFHWAIRPLTIALGAFTAMKLGISAGRAVSSKLNKAPKSEENKAGNKTDW LPQSVANVIFKDGLATTTTVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32250			Protein kinase superfamily pro...		Lus10009358 [exp]	0	1
AT4G16100			Protein of unknown function (D...		Lus10037716 [exp]	6.0	0.6672
AT4G14490	FHA		SMAD/FHA domain-containing pro...		Lus10031083 [exp]	14.7	0.5800
AT5G35980		YAK1	yeast YAK1-related gene 1 (.1....		Lus10009542 [exp]	14.8	0.7186
AT3G54620	bZIP	BZO2H4, ATBZIP2...	BASIC LEUCINE ZIPPER O2 HOMOLO...		Lus10018759 [exp]	17.3	0.6095
AT4G32250			Protein kinase superfamily pro...		Lus10019343 [exp]	18.0	0.7106
AT2G02040		NTR1, ATPTR2-B	NITRATE TRANSPORTER 1, ARABIDO...		Lus10030947 [exp]	19.1	0.6480
AT1G45000			AAA-type ATPase family protein...		Lus10017972 [exp]	19.4	0.6271
AT4G00060		MEE44	maternal effect embryo arrest ...		Lus10009279 [exp]	23.6	0.6765
AT3G01930			Major facilitator superfamily ...		Lus10032034 [exp]	33.9	0.5840
AT3G12570		FYD	FYD (.1.2.3.4)		Lus10023420 [exp]	35.2	0.5904

Compare expression of checked genes

Lus10009358 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.