Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36960 504 / 8e-180 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G26650 132 / 3e-34 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G55550 125 / 6e-32 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT3G07810 124 / 2e-31 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G17640 120 / 8e-31 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G14300 119 / 7e-30 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G33410 119 / 8e-30 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G47620 114 / 4e-28 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT5G40490 100 / 4e-23 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G13224 96 / 9e-22 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019341 [exp] 601 / 0 AT4G36960 471 / 7e-167 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10006396 [exp] 128 / 1e-33 AT3G07810 351 / 2e-118 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10022889 [exp] 126 / 1e-32 AT4G14300 315 / 9e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10043168 [exp] 126 / 5e-32 AT3G07810 456 / 2e-157 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10012348 [exp] 126 / 6e-32 AT3G07810 436 / 5e-149 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10032579 [exp] 124 / 4e-31 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10017555 [exp] 122 / 2e-30 AT3G07810 423 / 7e-144 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10000537 [exp] 121 / 3e-30 AT3G07810 420 / 8e-143 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10038806 [exp] 120 / 1e-29 AT3G07810 417 / 2e-141 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G044400 [exp] 570 / 0 AT4G36960 534 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.005G138600 [exp] 563 / 0 AT4G36960 540 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G196500 [exp] 132 / 1e-34 AT1G17640 274 / 4e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.003G040900 [exp] 130 / 4e-34 AT1G17640 272 / 3e-88 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G161600 [exp] 127 / 1e-32 AT3G07810 498 / 3e-174 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.011G088100 [exp] 127 / 2e-32 AT3G07810 428 / 1e-146 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.010G067500 [exp] 126 / 3e-32 AT4G14300 302 / 7e-99 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G222400 [exp] 126 / 3e-32 AT3G07810 439 / 8e-151 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G015700 [exp] 121 / 3e-30 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G010200 [exp] 120 / 4e-30 AT3G07810 413 / 2e-140 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10009360 pacid=23148904 polypeptide=Lus10009360 locus=Lus10009360.g ID=Lus10009360.BGIv1.0 annot-version=v1.0 ATGGAGCGAAAGCTTGTGGTTCTGGGTATCCCTTGGGAAGTGGATACTGAGGGTTTGAGGGATTATATGGGCAAGTTTGGGGATTTGGATGACTGTATTG TCATGAAGGTTGGAGCCCTCGAGCGGGCTTCCGGGCGATCTCGTGGTTTTGGGTATGTCACGTTTGCATCAGTTGAAGATGCCAAGACCGCATTAGAGAG TGAGCACTACCTTGGAAGCAGAATGCTGGAAGTTAAAGTGGCTACACCAAAGGAGGAGATGAGAGCACCTGGAAAGAAGGTGACAAGAATTTTTGTCGCT CGGATTCCTCCGTCTGTCACTGAAGGAACTTTCCGTAGTCATTTTGAGACATATGGAGACATAGTAGATTTGTACATGCCAAAGGATCATAGCTCAAAAA CTCATCGTGGAATTGGGTTTATCACATTTGCTAATGCAGAATCTGTAGACAGTTTGATGGTTGACACACATGAGTTGGGTGGTTCCACCATAGTTGTTGA TCGAGCAACACCTAAGGAAGATGACTATAGACCAGTAGGAAGAGCACCGTCACATGCCTCACATGTCTCCTCCCATGCCGCACATGCCTCCCATGCCTCA CACGGCGGGTATGGTGCATACAATGCATATATTTCTGCTGCTACTAGATACGCAGCCCTCGGTGCTCCCACCTTATATGACCATCCAGGCCAACTCTATG GAAGAGCTGAACCACCTAGGGGAACCAGGAAAAAGATATTTGTGGGAAGGCTTCCTCAGGAGGCGACCGCTGAAGATCTACGCCATTATTTTGGTAGATT TGGCCACATAATGGATGTTTATGTCCCAAAGGACCCCAAAAGAAGCGGCCATAGAGGTTTCGGATTTGTCACCTTTGCAGAAGATGGTGTGGCAGACCGT GTTGCTCGAAGGTCTCATGAGATTTGTGGCCATCAGGTTGCTATAGATTCAGCCACGCCACTTGACGAAGCCGGTCCCAGCGAGAGTTACATGATGCCTG GGGCAGCAGCAGCTCTTGGTGGTTATGGCGGTCCTTTGCGCAGCTTCGGTAGGATGTATGGAAACCTTGGGTTCGAAGATATGAGTTGGGGTTATGGCAT GGGTGCTGCAAGGCCCTCAAGAGCAGATTGGAGGTACAGACCGTATTAA
AA sequence Show only first row Show all	>Lus10009360 pacid=23148904 polypeptide=Lus10009360 locus=Lus10009360.g ID=Lus10009360.BGIv1.0 annot-version=v1.0 MERKLVVLGIPWEVDTEGLRDYMGKFGDLDDCIVMKVGALERASGRSRGFGYVTFASVEDAKTALESEHYLGSRMLEVKVATPKEEMRAPGKKVTRIFVA RIPPSVTEGTFRSHFETYGDIVDLYMPKDHSSKTHRGIGFITFANAESVDSLMVDTHELGGSTIVVDRATPKEDDYRPVGRAPSHASHVSSHAAHASHAS HGGYGAYNAYISAATRYAALGAPTLYDHPGQLYGRAEPPRGTRKKIFVGRLPQEATAEDLRHYFGRFGHIMDVYVPKDPKRSGHRGFGFVTFAEDGVADR VARRSHEICGHQVAIDSATPLDEAGPSESYMMPGAAAALGGYGGPLRSFGRMYGNLGFEDMSWGYGMGAARPSRADWRYRPY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36960			RNA-binding (RRM/RBD/RNP motif...		Lus10009360 [exp]	0	1
AT5G19430			RING/U-box superfamily protein...		Lus10009695 [exp]	2.2	0.8210
AT2G44300			Bifunctional inhibitor/lipid-t...		Lus10026220 [exp]	6.6	0.7745
AT5G62200			Embryo-specific protein 3, (AT...		Lus10031684 [exp]	7.7	0.7998
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Lus10039037 [exp]	9.6	0.8002
AT3G22845			emp24/gp25L/p24 family/GOLD fa...		Lus10021900 [exp]	10.2	0.7706
AT1G02070			unknown protein		Lus10009267 [exp]	11.0	0.8048
AT5G42000			ORMDL family protein (.1.2)		Lus10023031 [exp]	12.0	0.7720
AT3G02220			unknown protein		Lus10019392 [exp]	15.0	0.7916
AT5G28040	GeBP		DNA-binding storekeeper protei...		Lus10000940 [exp]	18.6	0.8010
AT3G16175			Thioesterase superfamily prote...		Lus10006837 [exp]	19.4	0.7903

Compare expression of checked genes

Lus10009360 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.