Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67050 455 / 3e-157 alpha/beta-Hydrolases superfamily protein (.1) AT5G42930 452 / 3e-156 alpha/beta-Hydrolases superfamily protein (.1) AT1G56630 420 / 3e-143 alpha/beta-Hydrolases superfamily protein (.1) AT1G45201 397 / 1e-134 AtTLL1 ARABIDOPSIS THALIANA TRIACYLGLYCEROL LIPASE-LIKE 1, triacylglycerol lipase-like 1 (.1.2) AT3G14360 328 / 7e-107 alpha/beta-Hydrolases superfamily protein (.1) AT5G18640 60 / 1e-09 alpha/beta-Hydrolases superfamily protein (.1) AT5G18630 58 / 5e-09 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT1G30370 55 / 7e-08 DLAH DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) AT2G30550 52 / 4e-07 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G06250 52 / 7e-07 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005092 [exp] 612 / 0 AT5G42930 490 / 2e-171 alpha/beta-Hydrolases superfamily protein (.1) Lus10005709 [exp] 406 / 1e-137 AT5G42930 517 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10042648 [exp] 405 / 5e-137 AT5G42930 514 / 2e-180 alpha/beta-Hydrolases superfamily protein (.1) Lus10003925 [exp] 350 / 1e-115 AT3G14360 574 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10037465 [exp] 350 / 2e-115 AT3G14360 584 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10015521 [exp] 61 / 1e-09 AT1G30370 524 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10038526 [exp] 59 / 6e-09 AT1G30370 539 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10000600 [exp] 55 / 3e-08 AT4G16820 304 / 4e-101 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10033968 [exp] 55 / 6e-08 AT5G18640 463 / 5e-164 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G044500 [exp] 582 / 0 AT5G67050 502 / 7e-176 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G027400 [exp] 459 / 8e-159 AT5G42930 529 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G027500 [exp] 458 / 3e-158 AT5G42930 529 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G138800 [exp] 452 / 4e-156 AT5G42930 433 / 7e-149 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G027800 [exp] 441 / 1e-151 AT5G42930 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G161500 [exp] 345 / 4e-113 AT3G14360 633 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G073800 [exp] 338 / 2e-110 AT3G14360 619 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G263200 [exp] 62 / 5e-10 AT1G30370 607 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Potri.009G057900 [exp] 60 / 2e-09 AT1G30370 626 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Potri.010G019500 [exp] 56 / 2e-08 AT5G18640 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10009361 pacid=23148903 polypeptide=Lus10009361 locus=Lus10009361.g ID=Lus10009361.BGIv1.0 annot-version=v1.0 ATGGAATGCACCAAGGGATTCTGCAGCAACTACATGCTTCTCGACTACGAAAAAATCGGCCTCCTCGATCTCGCCCGCCTCCTGTTCTCCTCTAACATCG AACACAGGAAGTTCATCGACAGCAAGGACACCCGAGAAGAGAGCTTCAAGCGGAGGTGGATCATCTTCGTCTCCATTGTCGTTCAGAAGATCCTTCAGTT GATCTCGAAGCCATTGTACTTCATTGGCTGGTGCATCGAGATGTGGCTCAGCCTCTTGGCTAACAACGGCGGCTTGCTCGGCCTGCTCGTCAACCTCCTC ACTTGGAAAGTGGTGAAATCAGATATATCGTCGGCGACATTCATCTCGTTCACCGGGAACTTCGATTACCGGACCGATTTGGATCGAAACATCAAACGAG AAGATCCTAGGTACAATCCGGCGCTTGCAATGATGGCCGCCAAAGCTTCTTACGAGAACCAATCTTTCATTGAAAACATTGTCACTAAAAAATGGGAGAT GGAGTTTTTGGGATTTTTCAACTTCTGGAATGCTTACCAAAACAAAGCGACGACTCAAGCGTTTATGATGAGAGACCGAACCACCACCCCGGACAACGAC AACCAAGCCGAAACCATAGTCGTGGCGTTCCGAGGAACGGAGCCTTTCGACGCTGATGCATGGTGCACCGACGTCGACATCTCCTGGTACGAACTCCGTG GCATGGGAAAAGTTCACGCCGGGTTCATGAAGGCATTGGGGCTCCAAAAGTGCACTGGCTGGCCCAAAAGGCCCTGCGGAGAAAACGAAAACGACACCGT TTCAGACGACGATGCTCGTCCACTATTCGCCTACTACAAAATCAGGGATATGCTCAAGGAGATTCTGTCGCGAAACGACAACGCGAAGTTCATCGTTACG GGGCACAGCCTGGGTGGCGCGTTGGCGATACTTTTCCCGGCGGTGTTGGCCTATCACGGGGAGAAGTTCCTGCTAGATAGGCTGGAAGGTGTGTTCACGT TCGGGCAGCCAAGAGTGGGGGACGAGGCGTTTGGGAACTACATGAAGAGGTGGTTAGAGGAGCACAATGTGACGTATTATAGGTTTGTTTACGGATACGA CATCGTTCCGAGGCTGCCGTACGATGGTTCGACGTTGATGTTCAAGCATTTCGGGACTTGCATCTTCTTCAACCGCAACTACCACGGCGAGGTGGTAATT GAGGAGCCAAACAAGAACTACTTCACCCCAAAGGAGATGACGATAATGGTGTGGAATGCGTTGATGGAGCTTAAGAGAAGCTTCACCATCTGCAGGTCTC ATGGCAAAGAGTACAGAGAAGGATGGCTACTGACGGGGACGAGAGTGATCGGTCTGTTGATCCCAGGGATTCCTCCTCACTTGAACCAAGATTACGTTAA CTCGACTCGTCTTGGCCCGCCTGACATCTGGTTTTCTCCTCGTACCACACCCCAACCCGCTAATGATCAAGCTAGTAGTGTTAATATATAG
AA sequence Show only first row Show all	>Lus10009361 pacid=23148903 polypeptide=Lus10009361 locus=Lus10009361.g ID=Lus10009361.BGIv1.0 annot-version=v1.0 MECTKGFCSNYMLLDYEKIGLLDLARLLFSSNIEHRKFIDSKDTREESFKRRWIIFVSIVVQKILQLISKPLYFIGWCIEMWLSLLANNGGLLGLLVNLL TWKVVKSDISSATFISFTGNFDYRTDLDRNIKREDPRYNPALAMMAAKASYENQSFIENIVTKKWEMEFLGFFNFWNAYQNKATTQAFMMRDRTTTPDND NQAETIVVAFRGTEPFDADAWCTDVDISWYELRGMGKVHAGFMKALGLQKCTGWPKRPCGENENDTVSDDDARPLFAYYKIRDMLKEILSRNDNAKFIVT GHSLGGALAILFPAVLAYHGEKFLLDRLEGVFTFGQPRVGDEAFGNYMKRWLEEHNVTYYRFVYGYDIVPRLPYDGSTLMFKHFGTCIFFNRNYHGEVVI EEPNKNYFTPKEMTIMVWNALMELKRSFTICRSHGKEYREGWLLTGTRVIGLLIPGIPPHLNQDYVNSTRLGPPDIWFSPRTTPQPANDQASSVNI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42930			alpha/beta-Hydrolases superfam...		Lus10009361 [exp]	0	1
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Lus10028287 [exp]	3.3	0.8197
AT3G59350			Protein kinase superfamily pro...		Lus10026708 [exp]	4.7	0.7971
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Lus10040199 [exp]	5.7	0.7884
AT5G40140			RING/U-box superfamily protein...		Lus10039447 [exp]	8.4	0.7621
AT3G62220			Protein kinase superfamily pro...		Lus10010072 [exp]	8.4	0.7378
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Lus10014845 [exp]	11.5	0.7147
AT3G58970		MRS2-4, MGT6	magnesium transporter 6 (.1)		Lus10015459 [exp]	13.0	0.7622
AT3G61260			Remorin family protein (.1)		Lus10018840 [exp]	13.0	0.7545
AT5G45030			Trypsin family protein (.1.2)		Lus10036208 [exp]	14.9	0.7343
AT3G61260			Remorin family protein (.1)		Lus10017811 [exp]	18.7	0.7530

Compare expression of checked genes

Lus10009361 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.