Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002255 [exp] 65 / 6e-11 AT3G05130 156 / 2e-40 unknown protein Lus10000927 [exp] 61 / 1e-09 AT3G05130 150 / 1e-38 unknown protein Lus10009363 [exp] 0 / 1 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009362 pacid=23148869 polypeptide=Lus10009362 locus=Lus10009362.g ID=Lus10009362.BGIv1.0 annot-version=v1.0 ATGGAAGGATCCGCAGAGTTGGAGATGATGAAGGCGCTGAACGTGCGACTGGTTTACGGCATGGCGGAAAAGATTCGGGAGGTGGAGACCTTGAAGCAGG AGAATCTAGGTCTGGAGTCCGAGTTGGAGAAGCGCGGCCGCGGAGATCTGAGCGTTGGGAGTGAATCAAGAGTGATCAAGCGGAGGGTTCTGTTTTCGGT TCTTGAGGGAGTCGGAGTCGTAGTCGAGTCGATGTTGAATTGGGAGAAGGAAGGGGAGATTGAGGCGCTGATGGAGAAAAACGCGAAGTTGACTGGCGAC CTCAGCAAGGTTTTGAGCGAGAAACATGTGATTGAAAGCGAGCTCGCACAGCTGGTCGAGGAAGCGGATCGGTCGAAGGCGAGAGTGCAGGGGATGGAAG AGAAGGCAGAGGAGAGCAGATGTGAGATCAGTGCACTCAATGAAAAAGTGAGTCTATTGAGTAGACAGAATATAGATTTAGAGAAGCAACTCGAGGATGT TCAACTGGTTAACAAAGGTTTTGAAATGAGATTGAATAGGGCTTGTACTCAGAACGGATCTCTGCGATCTGCGAGAGAATGGTTTCTTAAAGACAAGGCG GCGATTTACGAGGAAAAGGAGGAGCTGAAGGCCAAGATCGCTTCCTTGAAGGAACAAATCAATACAATTGATATGACTCCATGGACTGATCAGATAAATA ATGGCCTGGCAGTGGAAGAAGAGCTCGGTTCCTTGATTGAAGAACAAAGGGAGAAGATTAAGAAATTGATTAAGGAAAAAGATTCCCTTGGCCAGATGTT GGATTCCGTTAAGAAAGAATTGCAAAGCAATAAGAAGTTGTTGCAGGAGGTCTCTTCGGAGAACGATCGGTTTGAGAGAATCTGCAAGGAACACGATACT GAGATTGAAAAACAGAAAAAGAGTTTCGATTGGCTGCACAGTGAACTGGACGAAGCAAGAAACACCGCCAAGGATTACCAATTTGAAAACAATACGTTAG TTTCCCGGAATGCTGAGGCCGAGGAAGAACTCACCCGTGTCAATGAGGAGAATGCTCAGTTGAAATCTGACGCTGCAGAGATGCAGATTAAGATGAGAGA CGCTGCAGAGAAGGCTAACTCTGAGATAGAGAGTTTGCAGAAGGCTAACTCCGAGATAGAGAGTCTGCAGAAGGCAATGGAAGGTGAGATCGATACGCTG AAGAAGGACAAGGGTGTGACTGCGAAGAAGCTTGAGGGACATTTAATGTTGGTAAGACAATGTGTAAGAGACAAGGATGCAATGGTAAAGGAGATGAGTC AGCTGCTGGGGATGGTTGAGATATCTGCTGAGAAGAAGAAGAGATTCTGGGCTAACATCTGTCACTACTGCTTCAGCTGTTGCTTCACTTGCGTTTGCCC TTAA
AA sequence Show only first row Show all	>Lus10009362 pacid=23148869 polypeptide=Lus10009362 locus=Lus10009362.g ID=Lus10009362.BGIv1.0 annot-version=v1.0 MEGSAELEMMKALNVRLVYGMAEKIREVETLKQENLGLESELEKRGRGDLSVGSESRVIKRRVLFSVLEGVGVVVESMLNWEKEGEIEALMEKNAKLTGD LSKVLSEKHVIESELAQLVEEADRSKARVQGMEEKAEESRCEISALNEKVSLLSRQNIDLEKQLEDVQLVNKGFEMRLNRACTQNGSLRSAREWFLKDKA AIYEEKEELKAKIASLKEQINTIDMTPWTDQINNGLAVEEELGSLIEEQREKIKKLIKEKDSLGQMLDSVKKELQSNKKLLQEVSSENDRFERICKEHDT EIEKQKKSFDWLHSELDEARNTAKDYQFENNTLVSRNAEAEEELTRVNEENAQLKSDAAEMQIKMRDAAEKANSEIESLQKANSEIESLQKAMEGEIDTL KKDKGVTAKKLEGHLMLVRQCVRDKDAMVKEMSQLLGMVEISAEKKKRFWANICHYCFSCCFTCVCP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10009362 [exp]	0	1
AT5G53530		VPS26A	vacuolar protein sorting 26A (...		Lus10008868 [exp]	1.4	0.9331
AT1G58210		EMB1674	EMBRYO DEFECTIVE 1674, kinase ...		Lus10004374 [exp]	3.2	0.9235
AT1G68940			Armadillo/beta-catenin-like re...		Lus10029113 [exp]	4.2	0.9252
AT1G59600		ZCW7	ZCW7 (.1)		Lus10018676 [exp]	6.2	0.9137
AT3G55530		SDIR1	SALT- AND DROUGHT-INDUCED RING...		Lus10002706 [exp]	10.5	0.9246
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10042904 [exp]	11.0	0.9179
AT4G31720		STG1, TAFII15, ...	TBP-ASSOCIATED FACTOR 10, SALT...		Lus10034375 [exp]	12.2	0.9187
AT5G58220		ALNS, TTL	allantoin synthase, transthyre...		Lus10035966 [exp]	12.2	0.9236
AT1G73670		ATMPK15	MAP kinase 15 (.1)		Lus10034601 [exp]	15.0	0.9077
AT1G04555			unknown protein		Lus10014458 [exp]	16.5	0.9199

Compare expression of checked genes

Lus10009362 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.