Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67080 166 / 6e-50 MAPKKK19 mitogen-activated protein kinase kinase kinase 19 (.1) AT3G50310 156 / 5e-46 MKKK20, MAPKKK20 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) AT4G36950 144 / 2e-41 MAPKKK21 mitogen-activated protein kinase kinase kinase 21 (.1) AT2G30040 107 / 5e-27 MAPKKK14 mitogen-activated protein kinase kinase kinase 14 (.1) AT1G07150 103 / 3e-25 MAPKKK13 mitogen-activated protein kinase kinase kinase 13 (.1.2) AT4G26890 97 / 4e-23 MAPKKK16 mitogen-activated protein kinase kinase kinase 16 (.1) AT1G05100 93 / 4e-22 MAPKKK18 mitogen-activated protein kinase kinase kinase 18 (.1) AT2G32510 92 / 2e-21 MAPKKK17 mitogen-activated protein kinase kinase kinase 17 (.1) AT5G55090 91 / 6e-21 MAPKKK15 mitogen-activated protein kinase kinase kinase 15 (.1) AT3G06030 89 / 3e-20 AtANP3, MAPKKK12, ANP3 NPK1-related protein kinase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019340 [exp] 353 / 6e-123 AT5G67080 306 / 6e-103 mitogen-activated protein kinase kinase kinase 19 (.1) Lus10012668 [exp] 174 / 8e-53 AT3G50310 347 / 5e-119 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10029019 [exp] 94 / 4e-24 AT3G50310 96 / 3e-24 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10035284 [exp] 99 / 6e-24 AT2G32510 319 / 9e-107 mitogen-activated protein kinase kinase kinase 17 (.1) Lus10029023 [exp] 94 / 3e-23 AT3G50310 147 / 8e-43 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10030042 [exp] 96 / 8e-23 AT2G32510 324 / 2e-108 mitogen-activated protein kinase kinase kinase 17 (.1) Lus10034285 [exp] 94 / 1e-22 AT5G27510 183 / 6e-56 Protein kinase superfamily protein (.1) Lus10021551 [exp] 94 / 5e-22 AT5G55090 326 / 7e-107 mitogen-activated protein kinase kinase kinase 15 (.1) Lus10029047 [exp] 88 / 1e-21 AT3G50310 93 / 5e-23 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G139300 [exp] 171 / 6e-52 AT5G67080 329 / 6e-112 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.007G044800 [exp] 171 / 1e-51 AT5G67080 350 / 6e-120 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.005G139200 [exp] 162 / 4e-48 AT5G67080 305 / 2e-102 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.001G042400 [exp] 107 / 5e-27 AT3G50310 236 / 5e-75 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Potri.003G184200 [exp] 106 / 6e-27 AT4G36950 246 / 8e-79 mitogen-activated protein kinase kinase kinase 21 (.1) Potri.009G073200 [exp] 103 / 2e-25 AT1G07150 360 / 9e-120 mitogen-activated protein kinase kinase kinase 13 (.1.2) Potri.001G278600 [exp] 102 / 6e-25 AT1G07150 353 / 2e-117 mitogen-activated protein kinase kinase kinase 13 (.1.2) Potri.009G131100 [exp] 96 / 2e-23 AT3G50310 200 / 4e-62 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Potri.006G181000 [exp] 94 / 1e-22 AT3G45670 213 / 4e-66 Protein kinase superfamily protein (.1) Potri.004G171500 [exp] 90 / 5e-21 AT3G50310 202 / 7e-63 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10009364 pacid=23148875 polypeptide=Lus10009364 locus=Lus10009364.g ID=Lus10009364.BGIv1.0 annot-version=v1.0 ATGGACTGGATCCGAGGAGACTCCATCGGTTACGGAAGCACGTCGACGGTGAATCTCGCCTTTTCAAGAGCGTCGTCATCTCATTGTTGCGGTAGCAGCT CGATCTCGCCGCCGCCGGTGATGGCGAGAACAGAGGAGGATGATCGGAAACAGAGGAATTTTCAAATTCGCGGGACGCCTCTATTTATGGCGCCGGAATC GGTCACCGACAACGTCTACTCGCCGGCGTGTGATGTGTGGGGTCTCGGATGCGCCGTTGTGGAGATGCTGACCGGGAAGCCGGCGAGGAAGTTCGATCAG GGGATGGATGTTTTCTCGTTCTTGGTTAAGATCGGTGCCGGCGATGAATCCTTTTCGTCGCCGGCGATTCCGGATGAATTGTCCGGGGAAGCTAAGGATT TTCTCTCCAAGTGCTTCGTTAAAGATTCGAGTCAAAGATGGACGGCTGAGATGCTATTGAACCATCCCTTCGTCGTCAAGGAGCAAAACTGCGTCGTTTC GGAGGAATCATCACCGCGGTGCCCGTTCGATTTCCCTGAGTGGGTATCGGTACAATTGGGATCGAATTCGGATTTGGATTCGTCTCCTTTCGATTCAATG GTGTCCACAAGCGAGTGTTCGACTTCGTCGGAGGAGAGAATTCGAGCGTTGGCCGGCGATCGGCCTGGGGTAGGATGGGAAGATTCAGTGAGTTGGCTGG TAGTTAGGTGA
AA sequence Show only first row Show all	>Lus10009364 pacid=23148875 polypeptide=Lus10009364 locus=Lus10009364.g ID=Lus10009364.BGIv1.0 annot-version=v1.0 MDWIRGDSIGYGSTSTVNLAFSRASSSHCCGSSSISPPPVMARTEEDDRKQRNFQIRGTPLFMAPESVTDNVYSPACDVWGLGCAVVEMLTGKPARKFDQ GMDVFSFLVKIGAGDESFSSPAIPDELSGEAKDFLSKCFVKDSSQRWTAEMLLNHPFVVKEQNCVVSEESSPRCPFDFPEWVSVQLGSNSDLDSSPFDSM VSTSECSTSSEERIRALAGDRPGVGWEDSVSWLVVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67080		MAPKKK19	mitogen-activated protein kina...		Lus10009364 [exp]	0	1
AT4G17880	bHLH	bHLH004, MYC4	Basic helix-loop-helix (bHLH) ...		Lus10000037 [exp]	1.7	0.8838
AT3G15210	AP2_ERF	ATERF4, RAP2.5...	RELATED TO AP2 5, ethylene res...		Lus10018623 [exp]	4.6	0.8107
AT5G46760	bHLH	bHLH005, ATR2, ...	Basic helix-loop-helix (bHLH) ...		Lus10035365 [exp]	5.7	0.8575
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10004011 [exp]	6.2	0.8149
AT1G32640	bHLH	JIN1, JAI1, ZBF...	JASMONATE INSENSITIVE 1, Basic...		Lus10030970 [exp]	6.3	0.8383
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10030261 [exp]	10.4	0.8767
AT5G20190			Tetratricopeptide repeat (TPR)...		Lus10019409 [exp]	12.4	0.8421
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10024910 [exp]	16.7	0.8622
AT2G37250		ADK, ATPADK1	adenosine kinase (.1)		Lus10001984 [exp]	17.0	0.7806
AT3G05950			RmlC-like cupins superfamily p...		Lus10015128 [exp]	22.4	0.8359

Compare expression of checked genes

Lus10009364 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.