Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67090 636 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT5G67360 523 / 6e-176 ARA12 Subtilase family protein (.1) AT2G05920 499 / 2e-166 Subtilase family protein (.1) AT4G34980 498 / 4e-166 SLP2 subtilisin-like serine protease 2 (.1) AT3G14240 495 / 8e-165 Subtilase family protein (.1) AT3G14067 479 / 2e-158 Subtilase family protein (.1) AT5G51750 472 / 1e-155 ATSBT1.3 subtilase 1.3 (.1) AT1G04110 451 / 8e-148 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT1G01900 445 / 2e-145 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT1G20160 419 / 4e-136 ATSBT5.2 Subtilisin-like serine endopeptidase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001130 [exp] 658 / 0 AT5G67090 581 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10024815 [exp] 645 / 0 AT5G67090 543 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10009748 [exp] 638 / 0 AT5G67090 601 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10018721 [exp] 543 / 0 AT5G67360 531 / 7e-179 Subtilase family protein (.1) Lus10024814 [exp] 523 / 7e-177 AT3G14240 504 / 3e-169 Subtilase family protein (.1) Lus10011089 [exp] 509 / 8e-171 AT5G67360 1108 / 0.0 Subtilase family protein (.1) Lus10042644 [exp] 501 / 1e-169 AT5G67090 413 / 5e-136 Subtilisin-like serine endopeptidase family protein (.1) Lus10007765 [exp] 504 / 1e-168 AT5G67360 990 / 0.0 Subtilase family protein (.1) Lus10027891 [exp] 503 / 2e-167 AT5G67360 531 / 3e-178 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G045100 [exp] 915 / 0 AT5G67090 727 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.014G026700 [exp] 739 / 0 AT5G67090 582 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.002G124500 [exp] 728 / 0 AT5G67090 577 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.014G026500 [exp] 721 / 0 AT5G67090 604 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.014G026600 [exp] 551 / 0 AT5G67360 546 / 0.0 Subtilase family protein (.1) Potri.009G100500 [exp] 531 / 2e-178 AT4G34980 541 / 0.0 subtilisin-like serine protease 2 (.1) Potri.001G167300 [exp] 512 / 2e-171 AT3G14067 978 / 0.0 Subtilase family protein (.1) Potri.003G067000 [exp] 512 / 2e-171 AT3G14067 969 / 0.0 Subtilase family protein (.1) Potri.006G141200 [exp] 498 / 5e-166 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Potri.004G173900 [exp] 498 / 7e-166 AT4G34980 1108 / 0.0 subtilisin-like serine protease 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family
Representative CDS sequence Show only first row Show all	>Lus10009365 pacid=23148905 polypeptide=Lus10009365 locus=Lus10009365.g ID=Lus10009365.BGIv1.0 annot-version=v1.0 ATGAGCTCCAAAATTCTCCTCCTCCTTCTATTCCTTTCCCTCTCTCTTTTCGTAAACCCGACTTCCCAACAACCCGACGATGAACCACAACACACCTACA TCATCCGCATGGACCTCTCGGCCAAGCCCAAGCCTTTCGAGGACCACCACAGCTGGTTCATGTCCACTTTGCCCGATCCATCGCGCCACATCTACACTTA TTCCAGCTCGATCCACGGCTTCACAGCCAGGCTCACGAGCTCAGAGCTCGAGTCGCTGAAGTCGGTGCCTGGCTATGTTTCTTCCTCAAAAGATCGGATG CTCGAGCTCCACACGACTCACACGCCTGCATTCCTGGGCCTGGATGACGGCTCGGTTTCTTCCAAGTTAATGCCGGGTTCGAAGCAAGGGGAAGGTGTCA TTATTGGAATTGTGGACACCGGAATCTGGCCCGAAAGCGAGAGCTTTCGCGACGAAGGAATGACCAAAGTGCCATCAAGATGGAAGGGCAAATGCGTCAC AGCCACCCAATTCAACTCTTCCATGTGCAACAAGAAACTCATCGGAGCTTACTTCTTCAACAAGGGACTACTTGCCAAATATCCAGAGGTCAAGAATCTA ACGATCAATTCACCTCGAGACACCGATGGCCACGGTACCCACACGGCATCCACGGCCGCAGGAAGTCCCGTGAAATCTGCCTCGTACTTTGGCTACGCTC TGGGCACCGCCAGAGGCATCGCTCCACGTGCGCATGTATCGGTCTACAAGGCCTCGTGGAGGTACGGCACCGTCGAATCCGACGTCATTGCGGCCATTGA CCAAGCCATTCGAGACGGGGTCGACGTGCTGTCGATCTCGTTAGGGTTTTCTTCCGAACTCGCGTTTCTCGAGGACGATGCGATTTCCTCTGCTACGTTC ACTGCCAGCGAACGTGGCATATTCGTGGCAGCGTCGGCGGGGAATTCGGGTTCTTTGTATGGCACGGTGCTCAACGGTGTACCGTGGTTGACCACGGTCG GGGCAGGGACTGTGGACAGGAAGCTCGGCGGGGTTCTGACCCTAGGGAACGGGGAAACCATCCAGTTTGCATCACTGTATCCTGGTAACTTCTCGCGCAG CGAGAAGGACTTTGTGTTCCTTGATGGATGTACGAGTATAGAGGAAATGAAGAAGTATAGAAAGAGTATCGTCGTGTGCAAGGACAATTTGTCCCTTAGC ACGCAAGTCGAGAATGCTCAAGCCGCGAAACTCAGGGGAGTCGTCTTCATCACCGATTTTCAAGTTTCCGACCTCTACACTCGAGGCTCGATTCCAGCAG CGTACATCGGATCGGTACCCGGGAAGAAGGTGATCAACTATGTTGCTAAGTCAAAGAACCCTAGAGGGAAGCTGGAATTTCGAGATACAAAAATCGGCAT AGTGCCGGAGCCAAGGGTGGATGGGTACAGCGCCAGAGGACCATTTCCAAGCTGTCCTAGCATGGTGAAGCCAGACATTATAGCACCTGGGACATTAATC TTGGCAGCTTGGTCTCCAATCAGTTCAGTTGCTACAATTGGACAAAGCACAGAACTCTTCAGCAACTTCAACCTAGAGTCAGGGACATCAATGGCTGCAC CACATGTAGCCGGTGCAGCAGCATTGATCAAGAATGTGCATCCGGACTGGAGCCCAGCAGCAATTCGATCCGCGATGATGACCACAGCAAGTACACTAGA CAACAAAGGCGAACTACTCAAGGATATATCGGAGCACGACACCCAAGCTGACCCCTTTGCGACCGGATCAGGACACATTGTCCCCACGAAGGCAATGGAT CCGGGTTTGGTCTACGATGCCACATCAGACGACTACGTAGCCCTGCTATGTGCAATGAACTTGACATCCAAGCAAATTAAAGCCATCACTCGATCACCCG GCCACAAATGTGGTCAGACGAACAAGGGTAATTCAGTTCTCGACCTGAACTATCCTTCTTTCCTTGCCTACTTCAATGGCAACGATACAAGCTCAAAATC GAGGGTGGTTAGGGAGTTTCGGAGGAGTGTGACCAACGTCGGAGATGGCGGAGCGGCCACATATAGGGCCAAGATTGGTGGTGTGATGAAAGGGTTTGTG GTGAAAGTTGAACCAGAGAAGTTGGTGTTCAAGAAGAAGGGTGAGATGCTGCGCTTTAAGGTTAGTGTGGATGGCCCGGAGGCTATGAATGAAACGGTGG CGTATGGTTCGTTGAGTTGGGTTCATGATGGTGGGAAGTATGTGGTTAGGAGCCCCATTGTTGCTACAAGTCTTGTACCGGAATCTCCTTTTAGTTAA
AA sequence Show only first row Show all	>Lus10009365 pacid=23148905 polypeptide=Lus10009365 locus=Lus10009365.g ID=Lus10009365.BGIv1.0 annot-version=v1.0 MSSKILLLLLFLSLSLFVNPTSQQPDDEPQHTYIIRMDLSAKPKPFEDHHSWFMSTLPDPSRHIYTYSSSIHGFTARLTSSELESLKSVPGYVSSSKDRM LELHTTHTPAFLGLDDGSVSSKLMPGSKQGEGVIIGIVDTGIWPESESFRDEGMTKVPSRWKGKCVTATQFNSSMCNKKLIGAYFFNKGLLAKYPEVKNL TINSPRDTDGHGTHTASTAAGSPVKSASYFGYALGTARGIAPRAHVSVYKASWRYGTVESDVIAAIDQAIRDGVDVLSISLGFSSELAFLEDDAISSATF TASERGIFVAASAGNSGSLYGTVLNGVPWLTTVGAGTVDRKLGGVLTLGNGETIQFASLYPGNFSRSEKDFVFLDGCTSIEEMKKYRKSIVVCKDNLSLS TQVENAQAAKLRGVVFITDFQVSDLYTRGSIPAAYIGSVPGKKVINYVAKSKNPRGKLEFRDTKIGIVPEPRVDGYSARGPFPSCPSMVKPDIIAPGTLI LAAWSPISSVATIGQSTELFSNFNLESGTSMAAPHVAGAAALIKNVHPDWSPAAIRSAMMTTASTLDNKGELLKDISEHDTQADPFATGSGHIVPTKAMD PGLVYDATSDDYVALLCAMNLTSKQIKAITRSPGHKCGQTNKGNSVLDLNYPSFLAYFNGNDTSSKSRVVREFRRSVTNVGDGGAATYRAKIGGVMKGFV VKVEPEKLVFKKKGEMLRFKVSVDGPEAMNETVAYGSLSWVHDGGKYVVRSPIVATSLVPESPFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67090			Subtilisin-like serine endopep...		Lus10009365 [exp]	0	1
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10003530 [exp]	1.7	0.9517
AT3G61150	HD	HD-GL2-1, HDG1	HOMEODOMAIN-GLABRA2 1, homeodo...		Lus10011633 [exp]	3.5	0.9493
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10030156 [exp]	7.1	0.8951
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10029872 [exp]	10.8	0.9493
					Lus10035523 [exp]	11.8	0.9271
AT5G15430			Plant calmodulin-binding prote...		Lus10000141 [exp]	12.2	0.9470
					Lus10015828 [exp]	12.4	0.9467
AT5G15430			Plant calmodulin-binding prote...		Lus10003472 [exp]	13.6	0.9455
AT5G38760			Late embryogenesis abundant pr...		Lus10034100 [exp]	14.0	0.8048
AT1G57790			F-box family protein (.1)		Lus10004476 [exp]	15.3	0.9424

Compare expression of checked genes

Lus10009365 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.