Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67100 1633 / 0 ICU2 INCURVATA2, DNA-directed DNA polymerases (.1) AT5G63960 161 / 9e-40 EMB2780 DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases (.1.2) AT1G67500 94 / 1e-18 ATREV3 recovery protein 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019338 [exp] 2581 / 0 AT5G67100 1751 / 0.0 INCURVATA2, DNA-directed DNA polymerases (.1) Lus10033513 [exp] 175 / 5e-44 AT5G63960 1785 / 0.0 DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases (.1.2) Lus10020862 [exp] 148 / 9e-36 AT5G63960 1218 / 0.0 DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases (.1.2) Lus10029911 [exp] 98 / 5e-20 AT1G67500 1431 / 0.0 recovery protein 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G045300 [exp] 1968 / 0 AT5G67100 1734 / 0.0 INCURVATA2, DNA-directed DNA polymerases (.1) Potri.005G065800 [exp] 169 / 5e-42 AT5G63960 1817 / 0.0 DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases (.1.2) Potri.013G022200 [exp] 95 / 4e-19 AT1G67500 1426 / 0.0 recovery protein 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12254 [flax] [poplar] DNA_pol_alpha_N DNA polymerase alpha subunit p180 N terminal PF08996 [flax] [poplar] zf-DNA_Pol DNA Polymerase alpha zinc finger CL0194 [flax] [poplar] DNA_pol_B-like PF00136 [flax] [poplar] DNA_pol_B DNA polymerase family B CL0219 [flax] [poplar] RNase_H PF03104 [flax] [poplar] DNA_pol_B_exo1 DNA polymerase family B, exonuclease domain
Representative CDS sequence Show only first row Show all	>Lus10009366 pacid=23148915 polypeptide=Lus10009366 locus=Lus10009366.g ID=Lus10009366.BGIv1.0 annot-version=v1.0 ATGGAAGGCGAAGAGCAGCACCCAGTAGTCGCCGGAAGGCGGAGGAGCAGGGGCGGAGGCGACACGGCAAGGGCGGAAGCGTTGGAACGGCTCAAAGCCC TCCGCCGTGACGGCCGGAGATCCGACAGAGGATATGAGATCAAGGCTGAGAATCCGATCTACGACACCATGCCTGAGGAGGAGTACGCCAAGCTGGTCGC TCGTCGGAAAGAGGAAGCACACGAGTTTATAGTCGACGACGAAGGGATCGGCTACGGCGACGAGGGAGAGGAAGAGGATTGGTCAAAGGCCGGTCTCCCA ACTTCCTCCGACGAATCCGACGGCGGCGGTGGAGAACGCAGCAGCAGGCGGAAGAGAAAGATGGCGGAGAGGAAGGAGAAAGAGCCTCAGCAGAAGAAGG TTCATCCTTCTTCTCTAACGGCTGCTGCAGCGATGATGGGTAAACAGAAGCTTTCGACCTACTTTAATTCGACCGCCATGTTCAGGAATCGTGATTCGGA TAAATCAAAGAGTCTTGATTGCGATAGTATTGTGGATGACGTTATTGCCGAATTCGCACCTGATGAAGCTGATAGAGAAAAACGAAGGAGGGGACATCCA GTAGTGGTGAGTAATGCTTCGCAAGTTAAGAGCGAGTATCTGGTTAGTGTAGAGAATAAGGTTTCTGTCAATGTCGGCGATCCTGTTATTGATTCTTTAG AGAATAATGGCGGTGGTGATGAGGAAGAGAGACCGGATGTCGATGTAAAGGAGGTGGAGGAGGTACACGGAGTGAAAGATAAGGGATCTCTTGTCGGAGT TGAATTGGAATCGGAGAATGTTCGTGAGGTGAAGTTGGAACCAGTGGTGAAGGTGGAGGAGGCAAGGAGAACTCTAAATGCGAAGATGAGTACAGAGAAA AGAGATCCTAAATTAAGTGCCACAGCTGGATGGGAGGAAGTGAAAAGGAGTGGTGGAAATGGTGGCGTTGTGGAGGAGAATAACAGTGTGTCACGTAGTG AAGAGCAACCAGAGTTTGAAGTGGATTCAGACGGGTCTTTACCATTTTACATACTTGACGCTCATGAAGAGGCGTTTGGAGCTAACCGCGGCACTGTTTT TCTCTTTGGAAAGGTCAAAGCTGGGAATGTATACCATAGTTGCTGCGTGTTAGTAAAGAACATGCAGAGATGTGTTTATGCGATTCCCCACAATTCAATA TTTCAAACTGATGAGGTGCTTCGGCTAGAGAAAAACGTTGAAGAGTCACGGATTTCCCTTGCAGAATTCCGTAAAAAGCTTCAGGATGTGGCATATGGAT TAAAGGAGGAGGTGGCGAACCAACTAGTAAATCTCAAAGTGTCGAGTTTTAGCATGACTCCAGTCAAGAGAAAGTATGCGTTTGAGCGATCTGATGTTCC TCTTGGGGAGAATTATGCACTTAAGATTAATTACTCATTCAAGGATTCGCCACTTCCTACAGACCTAAGAGGAGAGACCTTTACTACTTTGCTTGGAACT AATACCAGTGCTTTGGAGCTTTTTCTTGTGAAAAGAAAGATTAAGGGACCCTCGTGGTTATTGATTCAAAAGTTCTCAACCCGCCAAACCTCTCAGAAGG TGAGCTGGTGCAAGTTTGAAATCGTTGTTGACTTCCCAAAAGACATTCACACTGCATCATCATCAAAAATTACAGCAGAGATCCCCCCAGTGGTGGTTAC AGCAATAAATTTGAAAACTATCTTAAATGAAAAGAAGAATGTGAACGAAATAGTTTCTGCATCTGTCGTCTGCTGTCACAAGGCCAAGCTTTTAGCCGGA GCTGAAGGCATGCTACTAGTTTCTAAACCTCGGATTGAGTTGAATCCATTTTTTGGTTTTACTGTTCAGATTGATACTCCTATGCTGGCTCCAGAACGGG AGAAACCTGGAATGGTCAGTCATTTTACTGTTGTCCGCAAACTTGATGGAGGTATATTTCCGATGGGTTTCTCGAAGGAGCTGGCTGATAGGAACATGAA GGCTGGGTCTCGGTCCACTATCTTATCCATGGAGCCCAGTGAAAGGTCTTTGCTGAATCGTCTGATGATCGAGTTGCATAAGTTAGATAGCGACATTCTT GTTGGACATAACATATCTGGGTTCGACTTGGACGTTCTCCTCCATAGAGCACAGGCTTGTCAAGTTCCAAGCAGCATGTGGTCCAAACTAGGCCGTCTGA AGCGTTCTACGATGCCCAAGCTTTCAAAACCAAATGGTACCAGAGCTAGCCAGGGAATTTTGTCTTGTTTATCTGGTCGGCTTTTATGCGATACATATAT ATGCTCCCGCGATCTACTGAAAGAGGTTAGCTATTCTTTGACACAACTTGCAAATACTCGACTGGGTAAACATCGGAAAGAGGTTGCTCCTCATGACATT CCCAAAATGTTCCAGACCTCTGAATCTCTTATCGAACTAATTCAATTGGGTGAGACAGATGCATGGCTTTCTATGGAACTTATGTTTCACCTAAGTGTTC TTCCACTCACACGTCAACTAACCAATATCAGTGGTAATCTTTGGGGGCAAACTTTCCAAGGTGCTAGGGCATTGAGAGTGGAGTATCTTCTATTGCATGC ATTTCATTCAAAGAAATATATTGTGCCAGACAAACAATATTCCTCTCATGCAAAGGAAGCATACATTACTAAGCGAAAAATGCATCACAACACTGACAAT ACGGTTACTGAAGAGTTGGAGGTTGAAGACATCGATTTTGAAAATGAACATCCAGAAAATTCGCATAGAAAAGGGAAGAAGGTTCCTGCCTATGCAGGTG GCTTAGTTCTGGAGCCAAAGAAAGGCTTGTATGACAAATATGTATTGCTTTTGGATTTCAATAGTCTGTATCCTTCTATCATTCAGGAATACAATATCTG CTTCACAACTGTGGAAAGATCTTCAGAGGGGGGAGTTTTTTCACGTCTACCTTCCAGCAAGACAACTGGAGTTTTGCCTGAGCTTTTGAAAAATTTAGTT GAGAGAAGGAGAATGGTAAAGAAATGGATGAAGAGCGCATCTGGCCTTAAAGTCCAACAGCTTGACATTCAACAACAAGCACTGAAGCTAACTGCTAACA GCATGTACGGATGTCTTGGATTTTCAAACTCAAGATTTTATGCTAAGCCTCTAGCAGAGCTTATTACTCTACAAGGAAGGGAGATTCTACAGAGTACTGT TGATCTAGTTCAACACAATCTGAACTTTGAGGTTATCTATGGTGATACAGATTCGATCATGATTTACAGTGGACTAGATGATATAGCAAAAGCAAAAGCA ATTGCCGGGAAGGTTATTCAGGAGGTGAACAAGAAGTACAGGTGTTTAGAAATAGATCTTGATGGCCTATACAAGAGAATGCTGCTACTGAAAAAGAAAA AGTATGCAGCTGTGAAGATTCAGTTCAAGGATGGGACACCATACGAGGTTAGAGAGTGCAAGGGTATCGACATGGTTCGTCGTGACTGGAGCTTGCTATC CAAGGAAGTGGGAGGTTTCTGTTTGGATCAGATCTTATCCGGGAGGTCGTGTGAAGATGTAGTGGAGTCGATACATAGTTATCTTATGAAGGTGCGGGAT GAAATGAGGAGTGAACAAGTAGAACTTAAGCAGTATGTTATCACTAAGTCATTAACTAAACCACCTGAAGCATACCCAGATGCTAAAAACCAACCCCATG TCATGGTGGCACTCAGATTGAAGCAAAGTGGTTACACAGCTGGTTGCTCAGCTCATGACACAGTCCCATACGTGATTTGCATCGAGCAGGGTGCTAGTTC AGGAGGTTCAGCAGGGATCGCTCAGCGAGCAAGGCACCCTGATGAGTTGGAAAAAGATGATGGGAAATGGATGATTGACATTGATTATTACTTGTCTCAA CAAATTCATCCAGTAGTTTCTCGTCTATGTGCTCCAATTCAGGGTACAAGTCCAGAGCGCTTGGCTGATTGCTTGGGGCTCGATTCGTCGAGGTTCCGGA GTAGATCGAACGATGCTGCAGATAGTGATCTTTCCAGCTCACTTGTGTTTGCTGGGAATGATGAGGAGAGATACCAGAGTTGTGAACCATTGACCTTGTC GTGTCCAAGCTGCTCCTCTACCTTTGACTGTCCTGCTATCTTCAGTTCCATTTACAAATCAATAAATGGAACAACGACACCAGAAGCGCAACCAGAAGAA TCGACATCCAATTTCTGGCGCACACTGAGGTGCCCGAAATGTCCAGAAGAAGGGAATCTCGGCAGAGTATCTCCAGCCACGATAGCCAACCAGGTTAGAA GGCAAGCAGAGAGTTATGTTTCCACTTACTACAAGGGCATAATGATGTGTGACGATGAAACGTGCAAGCATACGACGAGGAGTCTGAATCTGAGGCTAGT TGGAGAATCAGAGAAAGGAACAGTTTGCCCAAACTATCCCAGGTGCAACGGCCGGCTTGTGAGGAAGTATTCGGAAGGAGAACTGTACAGGCAACTCTCG TACTTCTGCTATTTGCTGGACACACAGCGCTGCCTTGAGAAGGAGCAGCAGCAGATGGAAGTGAGTAAGAGATTGGCACTGGAGGAAGAGCTGAGGAAAA TTCGGGGAGTGGTGGAGATGGCGGTGTCGACGGTGGAAAAGATGAGAGATCGGTGTGCCTATGGATGGGTGCAGCTTAACGACTTCACTGTTACAGTATG A
AA sequence Show only first row Show all	>Lus10009366 pacid=23148915 polypeptide=Lus10009366 locus=Lus10009366.g ID=Lus10009366.BGIv1.0 annot-version=v1.0 MEGEEQHPVVAGRRRSRGGGDTARAEALERLKALRRDGRRSDRGYEIKAENPIYDTMPEEEYAKLVARRKEEAHEFIVDDEGIGYGDEGEEEDWSKAGLP TSSDESDGGGGERSSRRKRKMAERKEKEPQQKKVHPSSLTAAAAMMGKQKLSTYFNSTAMFRNRDSDKSKSLDCDSIVDDVIAEFAPDEADREKRRRGHP VVVSNASQVKSEYLVSVENKVSVNVGDPVIDSLENNGGGDEEERPDVDVKEVEEVHGVKDKGSLVGVELESENVREVKLEPVVKVEEARRTLNAKMSTEK RDPKLSATAGWEEVKRSGGNGGVVEENNSVSRSEEQPEFEVDSDGSLPFYILDAHEEAFGANRGTVFLFGKVKAGNVYHSCCVLVKNMQRCVYAIPHNSI FQTDEVLRLEKNVEESRISLAEFRKKLQDVAYGLKEEVANQLVNLKVSSFSMTPVKRKYAFERSDVPLGENYALKINYSFKDSPLPTDLRGETFTTLLGT NTSALELFLVKRKIKGPSWLLIQKFSTRQTSQKVSWCKFEIVVDFPKDIHTASSSKITAEIPPVVVTAINLKTILNEKKNVNEIVSASVVCCHKAKLLAG AEGMLLVSKPRIELNPFFGFTVQIDTPMLAPEREKPGMVSHFTVVRKLDGGIFPMGFSKELADRNMKAGSRSTILSMEPSERSLLNRLMIELHKLDSDIL VGHNISGFDLDVLLHRAQACQVPSSMWSKLGRLKRSTMPKLSKPNGTRASQGILSCLSGRLLCDTYICSRDLLKEVSYSLTQLANTRLGKHRKEVAPHDI PKMFQTSESLIELIQLGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGQTFQGARALRVEYLLLHAFHSKKYIVPDKQYSSHAKEAYITKRKMHHNTDN TVTEELEVEDIDFENEHPENSHRKGKKVPAYAGGLVLEPKKGLYDKYVLLLDFNSLYPSIIQEYNICFTTVERSSEGGVFSRLPSSKTTGVLPELLKNLV ERRRMVKKWMKSASGLKVQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITLQGREILQSTVDLVQHNLNFEVIYGDTDSIMIYSGLDDIAKAKA IAGKVIQEVNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKIQFKDGTPYEVRECKGIDMVRRDWSLLSKEVGGFCLDQILSGRSCEDVVESIHSYLMKVRD EMRSEQVELKQYVITKSLTKPPEAYPDAKNQPHVMVALRLKQSGYTAGCSAHDTVPYVICIEQGASSGGSAGIAQRARHPDELEKDDGKWMIDIDYYLSQ QIHPVVSRLCAPIQGTSPERLADCLGLDSSRFRSRSNDAADSDLSSSLVFAGNDEERYQSCEPLTLSCPSCSSTFDCPAIFSSIYKSINGTTTPEAQPEE STSNFWRTLRCPKCPEEGNLGRVSPATIANQVRRQAESYVSTYYKGIMMCDDETCKHTTRSLNLRLVGESEKGTVCPNYPRCNGRLVRKYSEGELYRQLS YFCYLLDTQRCLEKEQQQMEVSKRLALEEELRKIRGVVEMAVSTVEKMRDRCAYGWVQLNDFTVTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67100		ICU2	INCURVATA2, DNA-directed DNA p...		Lus10009366 [exp]	0	1
AT1G04730		CTF18	CHROMOSOME TRANSMISSION FIDELI...		Lus10043134 [exp]	1.4	0.9657
AT3G48160	E2F_DP	E2FE, E2L3, DEL...	E2F-LIKE 3, DP-E2F-like 1 (.1....		Lus10042941 [exp]	1.7	0.9582
AT1G35530			DEAD/DEAH box RNA helicase fam...		Lus10009444 [exp]	2.2	0.9535
AT1G08260		ESD7, EMB142, E...	TILTED 1, EARLY IN SHORT DAYS ...		Lus10020576 [exp]	2.8	0.9578
AT2G36200			P-loop containing nucleoside t...		Lus10014216 [exp]	4.2	0.9643
AT3G54650		FBL17	RNI-like superfamily protein (...		Lus10024856 [exp]	4.9	0.9469
AT2G28130			unknown protein		Lus10016147 [exp]	7.9	0.9119
AT3G54650		FBL17	RNI-like superfamily protein (...		Lus10024855 [exp]	9.2	0.9290
AT4G21270		KATAP, ATK1	KINESIN-LIKE PROTEIN IN ARABI...		Lus10007629 [exp]	9.2	0.9431
AT3G59670			unknown protein		Lus10027104 [exp]	10.0	0.8947

Compare expression of checked genes

Lus10009366 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.