Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23420 956 / 0 NAPRT2 nicotinate phosphoribosyltransferase 2 (.1) AT4G36940 928 / 0 NAPRT1 nicotinate phosphoribosyltransferase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019337 [exp] 1155 / 0 AT2G23420 946 / 0.0 nicotinate phosphoribosyltransferase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G139800 [exp] 1010 / 0 AT2G23420 981 / 0.0 nicotinate phosphoribosyltransferase 2 (.1) Potri.007G045400 [exp] 1006 / 0 AT2G23420 972 / 0.0 nicotinate phosphoribosyltransferase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF04095 [flax] [poplar] NAPRTase Nicotinate phosphoribosyltransferase (NAPRTase) family
Representative CDS sequence Show only first row Show all	>Lus10009367 pacid=23148886 polypeptide=Lus10009367 locus=Lus10009367.g ID=Lus10009367.BGIv1.0 annot-version=v1.0 ATGGAGGCGGAACCGAATCATCATAGTCTTGTTCCGAATGGAGCAACGGCGGCCGGAGGTCAGGTGATGGATAGTCCTACTAATCCGATGGTTACTCCTC TATTGACGGATCTCTATCAGTACACCATGGCGTACGCTTACTGGAAAGCTTCCAAGCATAACGATCGAGCTGTGTTTGATTTGTACTTTCGGAGGAATCC GTTCGGAGGAGAGTACACGGTGTTTGCTGGTCTTGAAGAATGCATCAAGTTCATAGCTAATTTTAAGATGACTGAGGATGAGATCTCGTTCATCCGTGAG AGCCTGTCCGGTTCATGCGAGGATGGGTTTTTTGATTATCTTAGAAATCTTGATTGCTCTGAAGTAGAAGCCTATGCTATACCAGAGGGGTCAGTTGTCT TCCCCAAGGTACCACTGATGAGAATTGAAGGACCAGTTGCTATTGTTCAACTGTTGGAAACACCACTATTAAATCTCGTCAATTTTGCATCATTAGTTAC AACAAATGCAGCCCGGCATCGGTTTGTTGCTGGGAATTCAAAGATGCTACTTGAGTTTGGACTTCGAAGGGCACAGGGACCTGATGGCGCCATGTCCGCA TCAAAGTATTGTTACATTGGAGGGTTTGATGCAACAAGCAATGTTGCTGCTGGACGGTTATTTGGTATACCCCTTCGTGGAACACACTCCCATGCTTTTG TCAGCTCATTTATGAGTCCAGATGAGATCATAGACAAATCACTGAAAAGCTCTGATGGCTCAACTAGCTGTGAAGATTTTGTCAGTTTGGTTCAGAGCTG GTTAAACAAAATACAGTGGTCGAACTCATTCAGCGGTATGTTCGGCGAGACTAACCATAGTGAGCTAGCAGCTTTTGCTTCATACGCATTGGCATTCCCA GGAAATTTTCTAGCTCTTGTAGACACATACGACGTTATGAGGAGCGGGATCCCGAACTTTTGTGCAGTTGCTTTGGCACTGAATGATCTTGGCTACAAGG CAGGTGGCATCAGACTAGATTCCGGTGACTTGGCGTATCTATCATGCGAGGCTAGGAAGTTTTTCCAAACCATTGAGAAGGAATTCTCTGTTCCTGGTTT TGGGAAAATGAACATTACTGCCAGCAATGATCTCAATGAGGAAACTTTAGATGCTTTGAATAAACAGGGGCATGAAGTAGATGCATACGGGATCGGTACC TATTTAGTAACCTGCTACTCTCAAGCTGCTCTAGGCTGTGTTTTCAAGCTCGTTGAGATAAATGGACAGCCTCGAATCAAACTTTCCGAAGACGTTACAA AGGTTTCGATACCGTGTAAGAAACGTTGCTACAGATTGTATGGTAAAGAAGGATATGCACTGGTGGACATAATGACTGGGGAAAATGAACCTGTTCCAAA GGTTGGAGAGAGACTATTGTGCCGTCACCCTTTCAACGAGTCCAAGAGGGCGTTTGTTGTTCCGCAGAAGGTGGACGAGCTCTTGAAGTGTTACTGGCCC GGTACTTCAGGTAAACCGAGAGTGGAGTTGCCTTCTCTAAAGGAAACTAGAGAACGCTGCATCAACCAGCTCGATCAAATGCGATCAGACCACATGAGGA GATTGAACCCGACTCCGTACAAGGTGAGCGTGAGCGGGAAACTGTACGATTTCATCCATTTCCTGTGGCTAAACGAGGCCCCTGTTGGGGAGCTGCAGTG A
AA sequence Show only first row Show all	>Lus10009367 pacid=23148886 polypeptide=Lus10009367 locus=Lus10009367.g ID=Lus10009367.BGIv1.0 annot-version=v1.0 MEAEPNHHSLVPNGATAAGGQVMDSPTNPMVTPLLTDLYQYTMAYAYWKASKHNDRAVFDLYFRRNPFGGEYTVFAGLEECIKFIANFKMTEDEISFIRE SLSGSCEDGFFDYLRNLDCSEVEAYAIPEGSVVFPKVPLMRIEGPVAIVQLLETPLLNLVNFASLVTTNAARHRFVAGNSKMLLEFGLRRAQGPDGAMSA SKYCYIGGFDATSNVAAGRLFGIPLRGTHSHAFVSSFMSPDEIIDKSLKSSDGSTSCEDFVSLVQSWLNKIQWSNSFSGMFGETNHSELAAFASYALAFP GNFLALVDTYDVMRSGIPNFCAVALALNDLGYKAGGIRLDSGDLAYLSCEARKFFQTIEKEFSVPGFGKMNITASNDLNEETLDALNKQGHEVDAYGIGT YLVTCYSQAALGCVFKLVEINGQPRIKLSEDVTKVSIPCKKRCYRLYGKEGYALVDIMTGENEPVPKVGERLLCRHPFNESKRAFVVPQKVDELLKCYWP GTSGKPRVELPSLKETRERCINQLDQMRSDHMRRLNPTPYKVSVSGKLYDFIHFLWLNEAPVGELQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23420		NAPRT2	nicotinate phosphoribosyltrans...		Lus10009367 [exp]	0	1
AT5G05140			Transcription elongation facto...		Lus10027295 [exp]	6.3	0.8962
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10009890 [exp]	8.8	0.8671
AT3G23610		DSPTP1	dual specificity protein phosp...		Lus10006229 [exp]	10.5	0.8609
AT1G27700			Syntaxin/t-SNARE family protei...		Lus10007766 [exp]	10.6	0.8650
AT5G55560			Protein kinase superfamily pro...		Lus10001739 [exp]	12.0	0.8576
AT1G14780			MAC/Perforin domain-containing...		Lus10041285 [exp]	13.5	0.8586
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Lus10019478 [exp]	13.6	0.8814
AT5G52450			MATE efflux family protein (.1...		Lus10017998 [exp]	14.8	0.7843
AT1G27700			Syntaxin/t-SNARE family protei...		Lus10018703 [exp]	15.7	0.8262
AT5G05140			Transcription elongation facto...		Lus10039000 [exp]	17.7	0.8711

Compare expression of checked genes

Lus10009367 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.