Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67130 578 / 0 PLC-like phosphodiesterases superfamily protein (.1) AT1G49740 366 / 5e-125 PLC-like phosphodiesterases superfamily protein (.1) AT4G36945 366 / 3e-124 PLC-like phosphodiesterases superfamily protein (.1) AT3G19310 362 / 1e-122 PLC-like phosphodiesterases superfamily protein (.1) AT1G13680 344 / 2e-116 PLC-like phosphodiesterases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012600 [exp] 387 / 8e-133 AT1G13680 440 / 5e-155 PLC-like phosphodiesterases superfamily protein (.1) Lus10014072 [exp] 385 / 4e-131 AT1G49740 522 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Lus10019843 [exp] 380 / 3e-129 AT1G49740 524 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Lus10035130 [exp] 376 / 1e-128 AT1G13680 437 / 7e-154 PLC-like phosphodiesterases superfamily protein (.1) Lus10031973 [exp] 371 / 5e-127 AT1G13680 435 / 1e-153 PLC-like phosphodiesterases superfamily protein (.1) Lus10000649 [exp] 367 / 5e-125 AT1G13680 435 / 4e-153 PLC-like phosphodiesterases superfamily protein (.1) Lus10019339 [exp] 362 / 9e-122 AT4G36945 462 / 1e-161 PLC-like phosphodiesterases superfamily protein (.1) Lus10012665 [exp] 246 / 5e-80 AT1G49740 273 / 4e-92 PLC-like phosphodiesterases superfamily protein (.1) Lus10000092 [exp] 155 / 5e-45 AT4G36945 188 / 2e-58 PLC-like phosphodiesterases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G045700 [exp] 615 / 0 AT5G67130 591 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Potri.005G140100 [exp] 579 / 0 AT5G67130 572 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Potri.005G139400 [exp] 412 / 3e-142 AT4G36945 505 / 4e-179 PLC-like phosphodiesterases superfamily protein (.1) Potri.011G144900 [exp] 402 / 2e-138 AT1G13680 462 / 2e-163 PLC-like phosphodiesterases superfamily protein (.1) Potri.007G045200 [exp] 402 / 5e-138 AT4G36945 520 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Potri.004G140200 [exp] 396 / 8e-136 AT1G49740 548 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Potri.017G098900 [exp] 390 / 2e-134 AT1G13680 450 / 3e-159 PLC-like phosphodiesterases superfamily protein (.1) Potri.004G117500 [exp] 376 / 3e-128 AT1G13680 447 / 8e-158 PLC-like phosphodiesterases superfamily protein (.1) Potri.009G100332 [exp] 254 / 1e-82 AT1G49740 341 / 9e-118 PLC-like phosphodiesterases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009368 pacid=23148912 polypeptide=Lus10009368 locus=Lus10009368.g ID=Lus10009368.BGIv1.0 annot-version=v1.0 ATGTCCGCGTGTCTCCTGCACCGCCATCATCGGCCAATCTCAACTGGGTACCTCTTCATTTCTCTGCTCATTTCCTCACTCCTCCTAGCTCGCCCATCGG TTTTGGACCCGTGTACGCCGTCAACCAACTGCGGCCAGGGGCTTTACTGCGGTGGATGCGGCAAGAATCAGCCTGTTTGCACCAGAGGCCAAGCTACCAT TCCTACTTCCATTGTTCCGGGTGGGCTGCCTTTTAACAAGTATACTTGGTTGGTCACTCACAATTCGTTCAGCATCGTGGATGCGCCGCCTTTGCCTGGT GTTCAGAGGTTGACGTTCTACAATCAGGAGGATACTGTCAGTAATCAGCTCCTGAATGGAGTGAGAGGGCTGATGCTGGACATGTACGACTTCAATGGCG ATATATGGCTATGTCATTCATTCAAAGGCCAATGTTACAACTTCACAGCCTTTGAACCTGCAATCAACACATTGAAAGAAGTGGAAGCGTTCCTGAGTCA GAATCCATCCGAAATTGTGACCATTATACTCGAAGACTATGTCCACGCTCCGAAAGGGTTGAGCAATCTGTTTGCTCGAGCCGGTTTGGACAAGTACTGG TTTCCGATTTCCAAGATGCCTAGGAAGGGCGAAGATTGGCCTACTGTTGATGAGATGGTGCGGCAGAATTTCCGCCTTGTGGTTTTCACTTCGGTTGCTT CGAAGGAGGCTGACGAAGGGATCGCTTATCAGTGGAGGTATATGCTGGAAAATGAAGCTGGAGACCCTGGTGTAAAGCCGGGATCATGTCCGAACAGGAA AGAGTCAAAGCCGTTGAACTCGAGGAGTTCGTCTCTGTTCCTGATGAATTACTTCCCCACCTATCCGGTCGAAGCTGATGCTTGCAAAGAGCATTCGGCT CCTCTTGCTCAGATGATTGGAACTTGTTACAAATCGGCTGGAAACCAGATGCCGAATTTCTTGGCTGTCAACTTCTACATGAGAAGCGACGGTCTTGGTG TGTTCGACGATCTTGATAGGATGAATGGCCCGACGCTATGTGGCTGTACTAGTCTCAACGCTTGCCAGGCCGGGGCACCATTTGGAACCTGCAAGAACAT CACTCTACCGACCATGAGTCCTGTAACCAACACTGCTGGAAGCATGTCGTCGAGCACACAGGGTTCCGGAACCTTTTCCGGCTCTGTTCAGTTCAAATCA GCAGCTTCAACAACATTCAATAATCGTCCAAGTACATCCATCTTCGCCCTCTTCACCATTCCATTTATCGCATTTCTGTTACGAGTAAAGTACTAG
AA sequence Show only first row Show all	>Lus10009368 pacid=23148912 polypeptide=Lus10009368 locus=Lus10009368.g ID=Lus10009368.BGIv1.0 annot-version=v1.0 MSACLLHRHHRPISTGYLFISLLISSLLLARPSVLDPCTPSTNCGQGLYCGGCGKNQPVCTRGQATIPTSIVPGGLPFNKYTWLVTHNSFSIVDAPPLPG VQRLTFYNQEDTVSNQLLNGVRGLMLDMYDFNGDIWLCHSFKGQCYNFTAFEPAINTLKEVEAFLSQNPSEIVTIILEDYVHAPKGLSNLFARAGLDKYW FPISKMPRKGEDWPTVDEMVRQNFRLVVFTSVASKEADEGIAYQWRYMLENEAGDPGVKPGSCPNRKESKPLNSRSSSLFLMNYFPTYPVEADACKEHSA PLAQMIGTCYKSAGNQMPNFLAVNFYMRSDGLGVFDDLDRMNGPTLCGCTSLNACQAGAPFGTCKNITLPTMSPVTNTAGSMSSSTQGSGTFSGSVQFKS AASTTFNNRPSTSIFALFTIPFIAFLLRVKY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67130			PLC-like phosphodiesterases su...		Lus10009368 [exp]	0	1
AT4G37250			Leucine-rich repeat protein ki...		Lus10010263 [exp]	1.4	0.8971
AT2G43020		ATPAO2	polyamine oxidase 2 (.1)		Lus10029804 [exp]	2.0	0.8974
AT1G07220			Arabidopsis thaliana protein o...		Lus10040665 [exp]	3.2	0.8815
AT1G67070		PMI2, DIN9	PHOSPHOMANNOSE ISOMERASE 2, DA...		Lus10028480 [exp]	4.5	0.8946
AT1G21070			Nucleotide-sugar transporter f...		Lus10035824 [exp]	4.6	0.8899
AT4G22120			ERD (early-responsive to dehyd...		Lus10015551 [exp]	5.0	0.8943
AT5G20070		ATNUDX19, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10014493 [exp]	6.0	0.8844
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10010868 [exp]	6.1	0.8525
AT1G21070			Nucleotide-sugar transporter f...		Lus10036606 [exp]	7.1	0.8727
AT1G29390		COR413IM2, COR3...	COLD REGULATED 314 INNER MEMBR...		Lus10025378 [exp]	7.7	0.8967

Compare expression of checked genes

Lus10009368 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.