Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23380 728 / 0 SET1, SDG1, ICU1, CLF SETDOMAIN 1, SETDOMAIN GROUP 1, INCURVATA 1, CURLY LEAF, SET domain-containing protein (.1) AT4G02020 226 / 2e-62 SDG10, SWINGER, SWN, EZA1 SWINGER, SET DOMAIN-CONTAINING PROTEIN 10, SET domain-containing protein (.1) AT1G02580 155 / 5e-39 SDG5, EMB173, MEDEA, FIS1, MEA SET DOMAIN-CONTAINING PROTEIN 5, MEDEA, FERTILIZATION INDEPENDENT SEED 1, EMBRYO DEFECTIVE 173, SET domain-containing protein (.1) AT5G42400 67 / 5e-11 SDG25, ATXR7 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) AT4G30860 62 / 1e-09 SDG4, ASHR3 ASH1-related 3, SET domain group 4 (.1) AT4G27910 61 / 2e-09 SDG16, ATX4 SET domain protein 16 (.1) AT2G31650 61 / 3e-09 SDG27, TRX1, ATX1 SET DOMAIN PROTEIN 27, homologue of trithorax (.1) AT1G05830 61 / 5e-09 SDG30, ATX2 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) AT5G53430 59 / 2e-08 SET29, ATX5, SDG29 SET domain group 29 (.1) AT1G76710 58 / 2e-08 ASHH1 ,SDG26 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019336 [exp] 1469 / 0 AT2G23380 905 / 0.0 SETDOMAIN 1, SETDOMAIN GROUP 1, INCURVATA 1, CURLY LEAF, SET domain-containing protein (.1) Lus10041386 [exp] 239 / 4e-67 AT4G02020 489 / 9e-161 SWINGER, SET DOMAIN-CONTAINING PROTEIN 10, SET domain-containing protein (.1) Lus10025172 [exp] 66 / 1e-10 AT5G42400 501 / 6e-165 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10016051 [exp] 65 / 3e-10 AT5G42400 362 / 9e-104 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10016600 [exp] 61 / 2e-09 AT1G76710 600 / 0.0 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) Lus10005007 [exp] 61 / 6e-09 AT4G27910 611 / 0.0 SET domain protein 16 (.1) Lus10004012 [exp] 60 / 6e-09 AT3G61740 424 / 2e-136 SET domain protein 14 (.1.2) Lus10026725 [exp] 60 / 8e-09 AT1G05830 1272 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Lus10025508 [exp] 60 / 9e-09 AT1G05830 1256 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G045800 [exp] 956 / 0 AT2G23380 1063 / 0.0 SETDOMAIN 1, SETDOMAIN GROUP 1, INCURVATA 1, CURLY LEAF, SET domain-containing protein (.1) Potri.005G140200 [exp] 950 / 0 AT2G23380 1042 / 0.0 SETDOMAIN 1, SETDOMAIN GROUP 1, INCURVATA 1, CURLY LEAF, SET domain-containing protein (.1) Potri.014G120100 [exp] 430 / 2e-137 AT4G02020 877 / 0.0 SWINGER, SET DOMAIN-CONTAINING PROTEIN 10, SET domain-containing protein (.1) Potri.002G195700 [exp] 244 / 3e-68 AT4G02020 883 / 0.0 SWINGER, SET DOMAIN-CONTAINING PROTEIN 10, SET domain-containing protein (.1) Potri.005G260100 [exp] 67 / 6e-11 AT5G42400 397 / 5e-117 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.002G001000 [exp] 67 / 7e-11 AT5G42400 385 / 3e-112 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.002G232800 [exp] 62 / 2e-09 AT1G05830 1261 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.005G195400 [exp] 61 / 2e-09 AT1G76710 657 / 0.0 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) Potri.014G146300 [exp] 61 / 2e-09 AT1G05830 1273 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.014G098400 [exp] 59 / 1e-08 AT3G61740 1120 / 0.0 SET domain protein 14 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [flax] [poplar] SET SET domain
Representative CDS sequence Show only first row Show all	>Lus10009369 pacid=23148883 polypeptide=Lus10009369 locus=Lus10009369.g ID=Lus10009369.BGIv1.0 annot-version=v1.0 ATGGCGTCTAAGGCGTCTCCGTCGACTTCCGCCAACAGATCGGGGTCTCCCAAGGACACTTCGACGGAGAAGGCGGAAGAGTCAGGTCCAACGAGTGAGG AGATTGGGTCAATTATCGAATCGCTGAAAGCGCTTGTGGCGGATGAACGGTTTGTTTCTATAAAGGAAAGGATGAAAGAAAATAGAAACAAACTGGCGAG TGTCACAAGCCATCTACAGAAGTTGTCCATGGAAAGAAGAAACAGCTGGATTAACATTGGTGAAGCTAGTCAAGATCTGCTGAAAAAGAGGCAAGATGAA GCAGTCGGGATGCATAGCGGGTTTGGTCTTAGTAATGGTGATAGAGATAGTGACAGCTATCAAGAAGACTCTCATGGTTCTACAGCTGTTCTTCTGGGAA CTAGTATTCCTCCAGGGAAGAATTCTGTTAGGCCGATTAAGCTTCCAGGAGTGAAGAAGTTGCCTCCTTATACCACCTGGATATTTCTGGACAGAAATCA GAGGATGACAGAAGATCAATCAGTGGTGGGTCGGAGAAGGATATATTATGATAGTGGTGAAGCAGTTATTTGTAGTGATAGTGAGGAGGAAGCTGTTGAT GAAGAAGAGGAAAAAAGATTTTTTCTGCCGTCAGAAGATTATATCATACGCATGACCCTAGATAAAACTGGATTATCAAATGGTGCGCTCCAATCCTTGG CGGAATGTTTGTCCAGAAGTAAAGATGAAGTAAAGGCAAGATATGAAAGTCTAACCAAGGAAGAGAAGCCTTCAGTGGATTCCGTGGATGTGGGCAGTGA AGCACAAACAGTGAATTCTTTTCTTGATAAGGATCTGGAAGCTGCTTTGGATTCTTTTGACAACTTATTTTGCCGGCGTTGTCTTGTCTTCGATTGCAGA TTGCATGGATGCTCACAGGATCTTGTATTTCCAGTTGAGAAACAACTTCCATGGAACCATCCAGACATAGAAAATGTTCCATGTGGTCCACATTGCTACA AATCGGTGTTGAAGTCAGGGAAATTGGCTATTTTAAACTCTCCTGAGCTTAGTGATACAAAAGAAAACTCTCTTCAGCCATCTGGTTGTGCTGGGATTCG TATGTCTGAGAGGAATAAATCTACTTCATCTACTCGAAAGAAAGTCAAGCCCTCCCAAAGTGAAAGTGCCTCTTCAAATGTCAAAAACATGTCAGAGAGT AGTGACTCAGAGATTGGACCCCAAAATGATACTTCTTCCACTAGCCATTTGTCGCCCTCCAAGAATAATCTTATTGGAAAGGGTGGCATTTCTCACCGGA ACAGCAAGCGAGTGGCTGAACGTGTACTGGGTTGCATAAAGAAAAGGCAAAAGAAGTTGATAGGATCTGATTCTGATTCTGTGGCTAGTGGAGGTCTTTT GGGGGGTGATGCAACCAGTCCACATAAGGAAGATGAAGATGCCACTTCTTCTCCCAAAAAGGCAAGAAAATCTTCAAAAACTGGGAGGTCTAGGAAAACA GATTTTTCAGCTCATCAAGTGCAAGGCGAAGTATCAAGCCAGATGTGCACTGATCCACCTGGAAGTAGTAGTGATGAAACCTTGAGGAAAGATGACTATG TTGATGGAAACAAATGTAATCTGGAGTCGAATCATAACCTGTCTTGGAAACCCTTTGAAAAAAGTATGTTTGAGAAAGGTGTGGAAATTTTTGGCTGGAA TAGCTGTCTAATTACTAGGAACCTCTTAAATGGTTTAAAGACGTGCACGGAAGTTTATCACTACATGACACGAGGAGACAACAAGCTAGGCTGCCAAGCA GGCGATGGTGCAAATTCTCTTGGCGAAGGCTATTCAAAGTTTGAACATCAAGGCAATAATGAAGTTAGGAGAAGATCAAGGTTTTTACGCCGAAGAGGTA AAGTTCGCCGTTTGAAGTATTCATGGAAGTCTACAGCTTACCATTCTATCCGAAAGCGGATAAGTGACAAAAAAGATCAACCATGCCGCCAGTACAATCC GTGCGGCTGCCAAACAGCTTGTGGAAAGCAGTGCGCTTGCTTGCTGAATGGCACTTGCTGTGAGAAGTATTGTGGTCAAGGTTTGCTTTGCAGTTGTGGC GATGGCTCACTTGGTGTTCCTAATCAAAGCGGAGACAATTACGAGTGCCGGAATATGAAACTTCTTCTCAAACAACAGCAAAGGGTTTTACTTGGACGAT CCAATATATCTGGCTGGGGAGCTTTTCTGAAGTTCGTGCTTGATGCTTACCGGAAGGGCGACAAGTTGAAGTTTGCCAACCATTCTCCTGATCCAAACTG CTACGCCAAGGTGATCATGGTTGCAGGAGATCACAGAGTGGGGATATTCGCCAAAGAACGAATTGGTGCTGGAGAGGAGCTTTTCTACGACTATCGTTAC GAACCAGACAGAGCTCCTGCCTGGGCAAGGAAGCCCGAAGCATCCGGGTCGAAAAGGGAAGAGACGGGTCATACAAGTGGCCGAGCCAAGAAGCTGGCTT GA
AA sequence Show only first row Show all	>Lus10009369 pacid=23148883 polypeptide=Lus10009369 locus=Lus10009369.g ID=Lus10009369.BGIv1.0 annot-version=v1.0 MASKASPSTSANRSGSPKDTSTEKAEESGPTSEEIGSIIESLKALVADERFVSIKERMKENRNKLASVTSHLQKLSMERRNSWINIGEASQDLLKKRQDE AVGMHSGFGLSNGDRDSDSYQEDSHGSTAVLLGTSIPPGKNSVRPIKLPGVKKLPPYTTWIFLDRNQRMTEDQSVVGRRRIYYDSGEAVICSDSEEEAVD EEEEKRFFLPSEDYIIRMTLDKTGLSNGALQSLAECLSRSKDEVKARYESLTKEEKPSVDSVDVGSEAQTVNSFLDKDLEAALDSFDNLFCRRCLVFDCR LHGCSQDLVFPVEKQLPWNHPDIENVPCGPHCYKSVLKSGKLAILNSPELSDTKENSLQPSGCAGIRMSERNKSTSSTRKKVKPSQSESASSNVKNMSES SDSEIGPQNDTSSTSHLSPSKNNLIGKGGISHRNSKRVAERVLGCIKKRQKKLIGSDSDSVASGGLLGGDATSPHKEDEDATSSPKKARKSSKTGRSRKT DFSAHQVQGEVSSQMCTDPPGSSSDETLRKDDYVDGNKCNLESNHNLSWKPFEKSMFEKGVEIFGWNSCLITRNLLNGLKTCTEVYHYMTRGDNKLGCQA GDGANSLGEGYSKFEHQGNNEVRRRSRFLRRRGKVRRLKYSWKSTAYHSIRKRISDKKDQPCRQYNPCGCQTACGKQCACLLNGTCCEKYCGQGLLCSCG DGSLGVPNQSGDNYECRNMKLLLKQQQRVLLGRSNISGWGAFLKFVLDAYRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERIGAGEELFYDYRY EPDRAPAWARKPEASGSKREETGHTSGRAKKLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23380		SET1, SDG1, ICU...	SETDOMAIN 1, SETDOMAIN GROUP 1...		Lus10009369 [exp]	0	1
AT3G18730		BRU1, MGO3, TSK	TONSOKU, MGOUN3, BRUSHY1, tetr...		Lus10037327 [exp]	3.2	0.9216
AT2G13540		ENS, CBP80, ABH...	ENSALADA, CAP-BINDING PROTEIN ...		Lus10019031 [exp]	4.2	0.8960
AT3G12280		RB1, RBL1, RBR1...	RETINOBLASTOMA 1, RETINOBLASTO...		Lus10026154 [exp]	6.3	0.8808
AT3G09080			Transducin/WD40 repeat-like su...		Lus10017180 [exp]	8.5	0.8898
AT1G09010			glycoside hydrolase family 2 p...		Lus10029917 [exp]	9.5	0.8558
AT5G05560		EMB2771, APC1	EMBRYO DEFECTIVE 2771, E3 ubiq...		Lus10028975 [exp]	10.1	0.9103
AT3G18520		HDA15, ATHDA15	histone deacetylase 15 (.1.2)		Lus10024919 [exp]	13.7	0.8838
AT2G31580			tRNAHis guanylyltransferase (....		Lus10041070 [exp]	14.4	0.8337
AT1G78770		APC6	anaphase promoting complex 6 (...		Lus10030525 [exp]	15.9	0.8786
AT5G58370			P-loop containing nucleoside t...		Lus10009919 [exp]	17.3	0.8699

Compare expression of checked genes

Lus10009369 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.