Gene [FLAX] | FIBexDB

Lus10009371 [FLAX]

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JGI Phytozome v13

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Symbol

Arabidopsis homologues

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No hit found

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10006965 [exp]	54 / 1e-10	ND	38 / 7e-04
Lus10001030 [exp]	55 / 2e-10	ND	/
Lus10006964 [exp]	54 / 1e-09	AT5G48540	38 / 0.008	receptor-like protein kinase-related family protein (.1)
Lus10025477 [exp]	53 / 2e-09	ND	/
Lus10019333 [exp]	49 / 2e-08	ND	/
Lus10012134 [exp]	49 / 4e-08	AT5G40380	37 / 0.002	cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1)
Lus10025476 [exp]	49 / 5e-08	AT2G31620	44 / 3e-05	Receptor-like protein kinase-related family protein (.1)
Lus10010416 [exp]	47 / 2e-07	ND	36 / 0.004
Lus10012132 [exp]	45 / 6e-07	ND	38 / 0.001

Poplar homologues

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No hit found

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
		PF01657 [flax] [poplar]	Stress-antifung	Salt stress response/antifungal

Representative CDS sequence

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>Lus10009371 pacid=23148896 polypeptide=Lus10009371 locus=Lus10009371.g ID=Lus10009371.BGIv1.0 annot-version=v1.0

ATGCTGGCCTCGAACGGCCGGCCAGAAGACGCGGAGTTTCAGCTTATGGATGATTACAGGTCTTCTGTGATGCTGACGATGAAGAATGCTAGTACTGGCG

GATGCTACAGTGTCTACATGACTAACTCGGATGGTGATCAAGTTCCTGTTTGGTTTTATTTCTCGTACGATAATTTGAAAGTGGACAAGACTCGCTACGC

TTGCTACGATTCGGCCTCGAAAGTGTTGAGAAATGGGTGCTCCGGTAGAGCCGGAGGGGTCGTGTCTTTCGATTGGTGTTGTTTGAGGTACAAGATCTAC

AACATATGCGAGGGATAA

AA sequence

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>Lus10009371 pacid=23148896 polypeptide=Lus10009371 locus=Lus10009371.g ID=Lus10009371.BGIv1.0 annot-version=v1.0

MLASNGRPEDAEFQLMDDYRSSVMLTMKNASTGGCYSVYMTNSDGDQVPVWFYFSYDNLKVDKTRYACYDSASKVLRNGCSGRAGGVVSFDWCCLRYKIY

NICEG

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10009371 [exp]	0	1

Lus10009371 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.