Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019335 [exp] 177 / 4e-58 ND / Lus10019334 [exp] 121 / 8e-36 AT1G70690 40 / 2e-04 PLASMODESMATA-LOCATED PROTEIN 5, HOPW1-1-INDUCED GENE1, Receptor-like protein kinase-related family protein (.1) Lus10019333 [exp] 115 / 2e-33 ND / Lus10009370 [exp] 112 / 6e-31 ND / Lus10006964 [exp] 61 / 9e-12 AT5G48540 38 / 0.008 receptor-like protein kinase-related family protein (.1) Lus10025477 [exp] 54 / 3e-09 ND / Lus10003442 [exp] 52 / 3e-09 ND 37 / 0.002 Lus10001031 [exp] 47 / 4e-07 ND 38 / 8e-04 Lus10001030 [exp] 47 / 5e-07 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009372 pacid=23148879 polypeptide=Lus10009372 locus=Lus10009372.g ID=Lus10009372.BGIv1.0 annot-version=v1.0 ATGGCACTACTGTTGATCATACTGTCAATTTCGTGCCTTTCGCGACAGGTTAGGAGCTCAGTCTATGAACCGATATGTCTTGGAACCGACATGCACGGGA GGAGGTGCAACCCGGACAGGTTGAAGTCGAATGCCTCTCAAGAAGACATACTCAAGACATTTACGTACGGTGTATTCGATCAAGGCAGAGGTTCCAAATG CGTGCCTTTCGATTTCGAGTTAGAGAACGGTGACAAGCTCACCGTGTATAGCTATTTCGCCTGCAACTATGGTGTGGACGGGCTGGATGAGAGGTCCTGC CGCCGGTGTATGCATCGGGGCATCAAGAACCTGCGGGGAGGGATATGTCTCGGCAGTGCCGGTGCGGTTTCTAGTAATAAGTATTGTTGTATAAGGTATG AGACTTTCAACATGTGTGCTCAATAA
AA sequence Show only first row Show all	>Lus10009372 pacid=23148879 polypeptide=Lus10009372 locus=Lus10009372.g ID=Lus10009372.BGIv1.0 annot-version=v1.0 MALLLIILSISCLSRQVRSSVYEPICLGTDMHGRRCNPDRLKSNASQEDILKTFTYGVFDQGRGSKCVPFDFELENGDKLTVYSYFACNYGVDGLDERSC RRCMHRGIKNLRGGICLGSAGAVSSNKYCCIRYETFNMCAQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10009372 [exp]	0	1
					Lus10000400 [exp]	2.2	1.0000
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Lus10026877 [exp]	3.5	1.0000
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10029390 [exp]	3.9	1.0000
AT3G18150			RNI-like superfamily protein (...		Lus10014141 [exp]	4.0	0.9083
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10029913 [exp]	4.5	1.0000
AT5G18460			Protein of Unknown Function (D...		Lus10006860 [exp]	5.5	1.0000
AT4G29280		LCR22	low-molecular-weight cysteine-...		Lus10015983 [exp]	6.0	1.0000
AT3G45600		TET3	tetraspanin3 (.1)		Lus10023218 [exp]	6.5	0.9926
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10023977 [exp]	7.5	0.9889
AT5G47550			Cystatin/monellin superfamily ...		Lus10034773 [exp]	7.7	0.9115

Compare expression of checked genes

Lus10009372 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.