Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019329 [exp] 199 / 2e-61 ND / Lus10019330 [exp] 44 / 2e-05 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009375 pacid=23148888 polypeptide=Lus10009375 locus=Lus10009375.g ID=Lus10009375.BGIv1.0 annot-version=v1.0 ATGGAGAACGACGAGAATCCGTGTCCGGAGAAAACAGTAGAGGAAGTGGCAGAGTATCAAGACGGAAGTGCGAAGAAGGAGGATGAGGTAGATGGAATTA AGAAAAGCGGAGGAAGTGGATCCAGTAAGCAAGATTCGGAAGAGGACCGGACGATTTCGAGCGGCAATGAAGAAGACCGGACGAAATCGAGCGGCGGAGA AATGTTGAGTGATGAGAGGGAGACGGAGAGGGGGACGAGCTATTCCCTTACTCCTGCTAGTTGTATTCCGGATCCCCCAACCGATTCAGATGACGCATAT TTTTCCGAGAGTGGACCAGCCGTCAGATCGAGGTTCAGAAGGTATCGGTTGGATAAGAATCGGTATGTGAACAACTTTACGGTGGAAGAGGCAGCGATCA AAATTGGAGTGGCGAAGAGAAGAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAGATGGAACAGAGAAAAGTGAGGTTAACAGGAAGCAAGGTGCG GACGAGGATGCACCGAAAGGCGATGTCCATCGTAAGAGATCACTTGGTTAAGAGAACGAAAAGGATTGTCATGGAGAGAAAGAGCCAGAACCGAAGAGGA GCAAGAGGAGTGGCAGTGAGATTTGTGTCAACAATGGTTCACCGATTGTTCTCGACACTTGGGAAGGTGAAGGAATTCCCGGCAAAGAAAGCAAGAAGTA CCTTGGATGTCATAGCGAACCAAGGTCCCAGTGAATCGACAGGGAGCAAACCGGCTCGAACTTGTCCTTGTGAGGTTAGGAAACCCGAACCACAACAATC CTCGTCGGTTCATCAACCACAGTATCGCAAGGGATGTCCAGTCGAGTACGAACTGGAGTTTGTTTCAACGATCAAAAGGAACAAGCGGTTAGTTGAATTC GACCATATCAATGAGGTAATGGAAGAACAGCACCAAAGGAGACAGATAATGAATGCTGTGGTTGCTGAGATAGAGAAGGTTTCTCCAAAGCAGCAACCTA AAGATAGCACTTCTCCACAAGGTAGGGTGTCTGGCCACACGGTGTCCATTGCACGCTCGGTTGATGGCCGGCCGAACTTTTTAGCAGCTCTAGCGGCTGC TAGAGAGGAGTGGGAGCAGAGAGCGGCGGAGAGGGAGCGGGAGTGGGAACGGAGGGACCGAAATGGACAACTAACGCAAACCGATAGGAACAAGAATCAC AAACGAACTACTTCAACCTTAATCTACGCTTTCATAAAAGTAAATCGACAAATGGATTGTTCACGTAGTTCGGAAAATCCCTACTCTGCGGAGCTTCAGT GGGGGAGACTCGGCCCGAATCCACTATCACAAGTCACTGAGAAGAGTACAGAGAAGAACAGAGAGAACCCCAGTACAATTCCAAGAGCTTAA
AA sequence Show only first row Show all	>Lus10009375 pacid=23148888 polypeptide=Lus10009375 locus=Lus10009375.g ID=Lus10009375.BGIv1.0 annot-version=v1.0 MENDENPCPEKTVEEVAEYQDGSAKKEDEVDGIKKSGGSGSSKQDSEEDRTISSGNEEDRTKSSGGEMLSDERETERGTSYSLTPASCIPDPPTDSDDAY FSESGPAVRSRFRRYRLDKNRYVNNFTVEEAAIKIGVAKRRRKRRRRRRRRREMEQRKVRLTGSKVRTRMHRKAMSIVRDHLVKRTKRIVMERKSQNRRG ARGVAVRFVSTMVHRLFSTLGKVKEFPAKKARSTLDVIANQGPSESTGSKPARTCPCEVRKPEPQQSSSVHQPQYRKGCPVEYELEFVSTIKRNKRLVEF DHINEVMEEQHQRRQIMNAVVAEIEKVSPKQQPKDSTSPQGRVSGHTVSIARSVDGRPNFLAALAAAREEWEQRAAEREREWERRDRNGQLTQTDRNKNH KRTTSTLIYAFIKVNRQMDCSRSSENPYSAELQWGRLGPNPLSQVTEKSTEKNRENPSTIPRA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10009375 [exp]	0	1
AT5G51630			Disease resistance protein (TI...		Lus10012028 [exp]	6.5	0.7215
AT5G45180			Flavin-binding monooxygenase f...		Lus10023942 [exp]	21.9	0.6419
AT4G28290			unknown protein		Lus10018592 [exp]	23.8	0.6518
AT1G29690		CAD1	constitutively activated cell ...		Lus10029279 [exp]	24.0	0.6377
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10041764 [exp]	40.2	0.6346
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10018408 [exp]	43.6	0.6331
AT1G73370		ATSUS6, SUS6	ARABIDOPSIS THALIANA SUCROSE S...		Lus10017984 [exp]	49.9	0.5755
AT4G10955			alpha/beta-Hydrolases superfam...		Lus10023072 [exp]	71.1	0.5971
AT5G65750			2-oxoglutarate dehydrogenase, ...		Lus10029463 [exp]	79.7	0.5682
AT5G26730			Fasciclin-like arabinogalactan...		Lus10006371 [exp]	101.5	0.5607

Compare expression of checked genes

Lus10009375 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.