Plant FIBer expression Database

Lus10009382 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G72550 817 / 0 tRNA synthetase beta subunit family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020531
[exp]
1110 / 0 AT1G72550 878 / 0.0 tRNA synthetase beta subunit family protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G070200
[exp]
893 / 0 AT1G72550 939 / 0.0 tRNA synthetase beta subunit family protein (.1.2)
Potri.013G068100
[exp]
877 / 0 AT1G72550 930 / 0.0 tRNA synthetase beta subunit family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0383 PheT-TilS PF03483 B3_4 B3/4 domain
CL0123 HTH PF03484 B5 tRNA synthetase B5 domain
Representative CDS sequence
>Lus10009382 pacid=23142622 polypeptide=Lus10009382 locus=Lus10009382.g ID=Lus10009382.BGIv1.0 annot-version=v1.0
ATGCCGACGGTGAGCGTGGGAAGGGATCGGCTCTTCGCCGCCATTGGAGAAACTTACACTCAACAGCAATTCGAGGAGCTCTGCTTCGATTTCGGAATCG
AGCTTGATGACGTGACTACTGAGAAGGCCATCATGAGGAAAGAGAAGCACTTGGAAGAAGATGCTGATGACGATGAGGAAGTTATCTACAAAATTGAGGT
CGCTGCTAACAGATATGATTTACTTTGTCTCGAGGGTATTGCTCAAGCCCTGCGGGTGTTTATTAAGAAGGAAGAGACACCTGTCTATACACTTTCCAAC
GTGAGCAAGGAGTCAATGTTGAGGATGCATGTGAAGAAAGAGACATCAACAGTTCGGCCCTTTGTTGTTTGTGCTGTTCTGAGAAACATCACTTTTGACG
AAGCCAGTTATAATAGCTTCATTGATCTCCAAGACAAGCTTCATCAAAACATTTGCAGGCGGAGAACTCTTGTTGCAATTGGTACTCATGACCTGGACAC
GCTTCAAGCCCCATTCAGTTACGAGGGAAAAAATTTCAGAGCTGATGAACTGATAGAGTTTTACAAGGTGATTCCGAACAAAAGGATAATACTTTTGATT
ACAATTGTTCTTGTCGTATGCATGCCACTTCCCAGGACACCATCTGATTTGAAGCTGAAAAAGTTTCTGCATATAATCGAGGGCTCTCCTGTCTACCCAA
TTATATATGATCATGAAAGAACTGTCTTGTCTTTACCTCCTATCATCAATGGTGCTCATTCTGCCATCACTTTAAAGACAAAGAACGTCTTCATAGAATG
TACAGCCACTGATCTGACAAAGGCCAAGATTGTATTGAACACAATGGTGACAGCTTTCTCATCGTATTGTCTGAAAAAGTATGAAGTGGAACCAGTTGAA
GTAATATATGATGACGGAAAGTCTTTTGTATGCCCCGACTTATCTGAATACAGTATGGATGTTCCTTTATCTTACATCACTGGCTTAATTGGAACTGATG
AACTGAAGAAGGCAGATGAGGTCACTAGTCTGTTAAACCGGATGCAGCTGCGTGCTGAGAGATGTCCGTCGAATACTGAGGAGCAGAATATCAGAGTATC
AGTACCTCCAACTAGGAGTGATATTCTTCACCCTTGTGATGTTATGGAAGATGTTGCTATTGCATTTGGTTTCAATAACATTCCCAAGAGAAAGCTTCCA
TCTTTAAAGCCGCTGTCCTTGAATGAGTTCGAAAAACTTATCAGAGTGGAGGTTGCAATGAATGGTTTCACAGAGGTCGTGACATGGATTTTGTGTTCTT
ACCGAGAGAATTTTTCCATGTTAAACCGGACTGATAACAAATCAACAGCAGTTATTATCGGGAACCCTCGTTCTTCTGATTTTGAGGTTGTGCGAACTAG
CCTCTTGCCTGGAGCACTGAAAGTCGTCATGCATAATAAAGATCATCCCAAGCCCATAAAGATATTTGAAGTTGGTAATGTAGCTCGGTTGGACGGAACA
ACAGATGTCGGTGCTTCAAATCGCCTGCATCTTGGCGCTTTGTATTGCGGTACTAATTCTGGATTTGAGTTGATCCATTCCCTAGTAGACAGAGTAATGG
AAGCGATGGGAACTGAATTCAAACCAGATGGTGATCACTCTGGGTATTGCATACAGCGAGCCGAGGAACCTGAGTTTCTGTCAGGCCGACAAGCTTCCAT
CATTTACAAAGGAAAGCGCATTGGCATCTTTGGTATCGTCCACCCTCAGGTGTTGAGCAACTTTGACATCCCGGATCCGTGTTCGTTCTTGGAAATGGAC
ATTGAGGCATTATTCCTTACAGGGTGA
AA sequence
>Lus10009382 pacid=23142622 polypeptide=Lus10009382 locus=Lus10009382.g ID=Lus10009382.BGIv1.0 annot-version=v1.0
MPTVSVGRDRLFAAIGETYTQQQFEELCFDFGIELDDVTTEKAIMRKEKHLEEDADDDEEVIYKIEVAANRYDLLCLEGIAQALRVFIKKEETPVYTLSN
VSKESMLRMHVKKETSTVRPFVVCAVLRNITFDEASYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQAPFSYEGKNFRADELIEFYKVIPNKRIILLI
TIVLVVCMPLPRTPSDLKLKKFLHIIEGSPVYPIIYDHERTVLSLPPIINGAHSAITLKTKNVFIECTATDLTKAKIVLNTMVTAFSSYCLKKYEVEPVE
VIYDDGKSFVCPDLSEYSMDVPLSYITGLIGTDELKKADEVTSLLNRMQLRAERCPSNTEEQNIRVSVPPTRSDILHPCDVMEDVAIAFGFNNIPKRKLP
SLKPLSLNEFEKLIRVEVAMNGFTEVVTWILCSYRENFSMLNRTDNKSTAVIIGNPRSSDFEVVRTSLLPGALKVVMHNKDHPKPIKIFEVGNVARLDGT
TDVGASNRLHLGALYCGTNSGFELIHSLVDRVMEAMGTEFKPDGDHSGYCIQRAEEPEFLSGRQASIIYKGKRIGIFGIVHPQVLSNFDIPDPCSFLEMD
IEALFLTG

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G72550 tRNA synthetase beta subunit f... Lus10009382
[exp]
0 1
AT4G19210 ABCE2, ATRLI2 ARABIDOPSIS THALIANA RNASE L I... Lus10034771
[exp]
1.7 0.8566
AT5G23740 RPS11-BETA ribosomal protein S11-beta (.1... Lus10008806
[exp]
5.1 0.8159
AT3G44850 Protein kinase superfamily pro... Lus10005363
[exp]
7.7 0.7916
AT2G45620 Nucleotidyltransferase family ... Lus10015854
[exp]
15.4 0.7949
AT4G39280 phenylalanyl-tRNA synthetase, ... Lus10014563
[exp]
16.7 0.8119
AT1G80920 AtToc12, AtJ8, ... translocon at the outer envelo... Lus10014352
[exp]
17.7 0.7570
AT3G26750 unknown protein Lus10021459
[exp]
20.8 0.7210
AT2G30140 UDP-Glycosyltransferase superf... Lus10042260
[exp]
25.9 0.7690
AT1G63780 IMP4 Ribosomal RNA processing Brix ... Lus10037326
[exp]
28.1 0.7640
AT1G44835 YbaK/aminoacyl-tRNA synthetase... Lus10025613
[exp]
28.4 0.7229

Lus10009382 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.