Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07370 351 / 6e-122 ATIPK2A, IPK2a inositol polyphosphate kinase 2 alpha (.1.2.3.4) AT5G61760 351 / 1e-121 ATIPK2BETA ARABIDOPSIS THALIANA INOSITOL POLYPHOSPHATE KINASE 2 BETA, inositol polyphosphate kinase 2 beta (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020535 [exp] 618 / 0 AT5G61760 354 / 6e-123 ARABIDOPSIS THALIANA INOSITOL POLYPHOSPHATE KINASE 2 BETA, inositol polyphosphate kinase 2 beta (.1) Lus10020534 [exp] 426 / 2e-140 AT5G36930 414 / 1e-124 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10009397 [exp] 166 / 5e-52 AT5G07370 96 / 3e-25 inositol polyphosphate kinase 2 alpha (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G109500 [exp] 435 / 2e-154 AT5G61760 394 / 2e-138 ARABIDOPSIS THALIANA INOSITOL POLYPHOSPHATE KINASE 2 BETA, inositol polyphosphate kinase 2 beta (.1) Potri.012G111400 [exp] 419 / 1e-148 AT5G61760 404 / 1e-142 ARABIDOPSIS THALIANA INOSITOL POLYPHOSPHATE KINASE 2 BETA, inositol polyphosphate kinase 2 beta (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF03770 [flax] [poplar] IPK Inositol polyphosphate kinase
Representative CDS sequence Show only first row Show all	>Lus10009385 pacid=23142625 polypeptide=Lus10009385 locus=Lus10009385.g ID=Lus10009385.BGIv1.0 annot-version=v1.0 ATGTTCAAAGTTCCAGAACATCAGGTTGCTGGACATCAAGCCATCAATGGCCTCCTTGGTCCTCTCGTAGATGATTCGGGGCGATTCTACAAGCCACTTC AAGGCGATGAACGTGGCGCCACGGAGATGGCATTCTACACATCGTTTTCTACTCACAAAACGATTCCAGAACATGTTCGGAGGTTTTTCCCAGCGTTCTA TGGCACTCAGAGTATAGAGGCTTCCGATGGATCGGGCCTCCACCCTCACCTCATCTTAGAGGATCTCACTTCAACTCGGTTGCATCCGTGTGTCATGGAC ATTAAGATTGGTTCCAGGACGTGGTACCCCGAGGCTTCTCAGGCCTATATTGAGAAATGCATGAAGAAGGATACCGAATCCAGCAGTCCCTTGCTTGGGT TTCGGATATCCGGATTGCAGGTTTACGGTAACGACAAAGAATCATCGGAGGTGGTCTTGAAGCCTGAGAGGAAGCTTCTCCAGAATCTGAATGCTGGTGA AGTTAGGCTGGTGCTTAAACGGTTTGTTTCCTCCAACCCGAAGTCGGACCAACCCGATTGTTCGTTTGCAGCGGTCGTTTACGGTGGCTCGAATGGGATT TTGGCTCAGTTGCTGGAGCTGAAGGCGTGGTTTGAGGATCAGACCATCTATCATTTCAACTCTTGTTCTGTTCTTATGGTGTATGAGAAGGAGAAGACGA AGATGGTGAATGAAGGAGGAGGAGAGAGTTTGGGTGGTGCTGCGGTGAAGCTCATCGATTTTGCTCATGTGACGGAGGGAAATGGCATTATCGATCACAA CTTTCTTGGAGGGCTCTGCTCATTGATAAAGTTCATTTATGAGATCCTCACCGGTCCGGATGAGAACTCTCCCAAGTCATGCCTGCAAGATGGTGCTGCA GAATCAAATCATGTTCTCGCTTGA
AA sequence Show only first row Show all	>Lus10009385 pacid=23142625 polypeptide=Lus10009385 locus=Lus10009385.g ID=Lus10009385.BGIv1.0 annot-version=v1.0 MFKVPEHQVAGHQAINGLLGPLVDDSGRFYKPLQGDERGATEMAFYTSFSTHKTIPEHVRRFFPAFYGTQSIEASDGSGLHPHLILEDLTSTRLHPCVMD IKIGSRTWYPEASQAYIEKCMKKDTESSSPLLGFRISGLQVYGNDKESSEVVLKPERKLLQNLNAGEVRLVLKRFVSSNPKSDQPDCSFAAVVYGGSNGI LAQLLELKAWFEDQTIYHFNSCSVLMVYEKEKTKMVNEGGGESLGGAAVKLIDFAHVTEGNGIIDHNFLGGLCSLIKFIYEILTGPDENSPKSCLQDGAA ESNHVLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61760		ATIPK2BETA	ARABIDOPSIS THALIANA INOSITOL ...		Lus10009385 [exp]	0	1
AT5G37980			Zinc-binding dehydrogenase fam...		Lus10040177 [exp]	1.4	0.9083
AT5G45030			Trypsin family protein (.1.2)		Lus10038347 [exp]	1.7	0.8906
AT1G32860			Glycosyl hydrolase superfamily...		Lus10017344 [exp]	2.0	0.8920
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10027879 [exp]	4.0	0.8867
AT3G52500			Eukaryotic aspartyl protease f...		Lus10021292 [exp]	4.2	0.8767
AT3G51850		CPK13	calcium-dependent protein kina...		Lus10004807 [exp]	4.7	0.8502
AT1G51630			O-fucosyltransferase family pr...		Lus10037328 [exp]	5.2	0.8536
AT1G72160			Sec14p-like phosphatidylinosit...		Lus10001539 [exp]	6.3	0.8528
AT5G37980			Zinc-binding dehydrogenase fam...		Lus10004380 [exp]	9.2	0.8830
AT3G52500			Eukaryotic aspartyl protease f...		Lus10021293 [exp]	10.6	0.8412

Compare expression of checked genes

Lus10009385 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.