Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22740 868 / 0 ATCSLA2, ATCSLA02 CELLULOSE SYNTHASE-LIKE A 2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A02, cellulose synthase-like A02 (.1) AT5G03760 768 / 0 ATCSLA9, RAT4, CSLA9, ATCSLA09 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT1G23480 699 / 0 ATCSLA3, ATCSLA03 cellulose synthase-like A3 (.1.2.3) AT4G13410 676 / 0 ATCSLA15 CELLULOSE SYNTHASE LIKE A15, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT1G24070 640 / 0 ATCSLA10 CELLULOSE SYNTHASE LIKE A10, cellulose synthase-like A10 (.1) AT2G35650 637 / 0 ATCSLA7, CSLA7, ATCSLA07 CELLULOSE SYNTHASE LIKE A7, cellulose synthase like (.1) AT5G16190 601 / 0 ATCSLA11 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE A11, cellulose synthase like A11 (.1) AT3G56000 594 / 0 ATCSLA14 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE A14, cellulose synthase like A14 (.1) AT4G16590 521 / 0 ATCSLA1, ATCSLA01 CELLULOSE SYNTHASE-LIKE A1, cellulose synthase-like A01 (.1) AT3G28180 417 / 4e-139 ATCSLC4, CSLC4, ATCSLC04 CELLULOSE-SYNTHASE LIKE C4, Cellulose-synthase-like C4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008646 [exp] 772 / 0 AT5G03760 890 / 0.0 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10020539 [exp] 708 / 0 AT5G22740 612 / 0.0 CELLULOSE SYNTHASE-LIKE A 2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A02, cellulose synthase-like A02 (.1) Lus10035580 [exp] 682 / 0 AT5G03760 805 / 0.0 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10007715 [exp] 411 / 8e-137 AT4G07960 1010 / 0.0 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) Lus10018651 [exp] 409 / 2e-136 AT4G07960 978 / 0.0 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) Lus10025886 [exp] 409 / 2e-135 AT3G07330 994 / 0.0 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) Lus10038217 [exp] 402 / 2e-135 AT3G07330 821 / 0.0 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) Lus10020120 [exp] 404 / 4e-134 AT4G31590 1012 / 0.0 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) Lus10026923 [exp] 405 / 6e-134 AT4G31590 1078 / 0.0 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G149700 [exp] 921 / 0 AT5G22740 910 / 0.0 CELLULOSE SYNTHASE-LIKE A 2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A02, cellulose synthase-like A02 (.1) Potri.004G189000 [exp] 899 / 0 AT5G22740 927 / 0.0 CELLULOSE SYNTHASE-LIKE A 2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A02, cellulose synthase-like A02 (.1) Potri.006G116900 [exp] 803 / 0 AT5G03760 928 / 0.0 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.010G234100 [exp] 789 / 0 AT5G03760 870 / 0.0 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.008G026400 [exp] 758 / 0 AT5G03760 854 / 0.0 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.002G114200 [exp] 404 / 1e-133 AT4G07960 1031 / 0.0 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) Potri.018G009300 [exp] 401 / 2e-132 AT4G31590 1077 / 0.0 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) Potri.006G270900 [exp] 400 / 3e-132 AT4G31590 1085 / 0.0 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) Potri.014G190900 [exp] 396 / 4e-132 AT3G07330 863 / 0.0 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) Potri.005G146900 [exp] 398 / 4e-131 AT4G07960 1050 / 0.0 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF00535 [flax] [poplar] Glycos_transf_2 Glycosyl transferase family 2
Representative CDS sequence Show only first row Show all	>Lus10009387 pacid=23142611 polypeptide=Lus10009387 locus=Lus10009387.g ID=Lus10009387.BGIv1.0 annot-version=v1.0 ATGGCGCAAGATTCACCGAGGATAATGATACCGGAGGCGCTGCAGCTGTCGCGGGACGACATTCTGGTACAATTCTCGCTAATGTGGGAGTTCATCAAGG CGCCGTTGATCGTGCCGCTTCTGAGATTCGGGGTCGTGGTATGTCTAATCATGTCCCTGATGCTCTTCTGCGAGAGGGTGTACATGGGGATCGTCATCGT AATGGTGAAGCTCTTCTTCAAGAAGCCAGATGAGCGGTACAATTGGCGGCCGTTGGAAGAGGAAGAGGATATGGAGTCCGGTAGTGGCTCGAGTTTTCCG TCGGTGCTCATACAAATCCCCATGTTTAATGAGCGTGAGGTGTACAAGCTCTCGATTGGCGCTGCCGCGAATCTTTCTTGGCCTGCGGAACGGCTTGTGA TCCAAGTTCTTGACGACTCTACTGATCCAGAAATCAAGCAAATGGTGGAGATGGAATGCCAGAGGTGGGCGAGCAAAGGGATAAACATCCGGTACCAAAT CCGGGAGAATCGGGTCGGGTACAAGGCCGGAGCACTGAAAGAAGGGCTGAAACGGAGTTACGCTAAGCACTGTGAGTACGTCGCCATCTTCGACGCCGAT TTCCAGCCGGAGCCGGATTACCTCCGCCGTGCTATTCCGTTTCTGGTTCAGAACTCCGACATTGCCCTCGTTCAAGGCCGATGGCGATTCGTTAATTCCA ACGAGTGTCTGCTGACAAGAATGCAAGAGATGTCACTAGATTACCATTTCACAGTGGAGCAAGAAGTCGGTTCTGCTACCCATGCCTTCTTCGGCTTCAA TGGGACTGCTGGAGTATGGAGAATTGCAGCAATCAATGAGGCTGGTGGGTGGAAAGATAGAACCACCGTTGAGGATATGGATCTTGCTGTCAGGGCCAGC CTTCGTGGCTGGAAGTTTGTTTACCTTGGCGACCTCCAGGTGAAGAGTGAGCTACCTAGTACTTTCAAGGCCTTCAGGTTCCAGCAACATAGGTGGTCCT GTGGCCCTGCCAATCTCTTCAGGAAAATGGTCATGGAGATTGTCCGAAACAAGAAAGTGAGGTTCTGGAAGAAAGTGTACGTGATCTACAGCTTCTTCTT TGTCCGGAAAATCATAGCCCATATGGTCACATTCATATTCTACTGTGTTGTACTTCCTCTGACAATCTTGGTCCCTGAAGTTCAAGTTCCCATATGGGGA GCTGTCTATATCCCTTCCATCATCACAATCCTCAACTCTGTTGGAACTCCAAGGTCGATTCACTTGCTGTTCTACTGGATCCTGTTTGAGAATGTGATGT CATTGCACCGTACAAAAGCCACACTGATTGGGCTGATGGAATATGGAAGGGCTAATGAATGGGTTGTGACTGAGAAGCTTGGAAACACTCTGCAGAAAGC TGCTGATGCTGCTGCCAAGAACAAGGCTGCTCCCAAGGCTGTCAAACGACACCATTTCAAATTCACTGAGAGGTTGAACAAGATAGAGTTGGGATTTGCA CTGTTCCTCTTCATATGTGGCTGCTATGACTATGCCCATGGGAAGAACAACTACTTTGTGTACCTATGGCTTCAAACCGTCACCTTCTTCATAGCTGGAG TTGGCTACATTGGCACAATCATATAA
AA sequence Show only first row Show all	>Lus10009387 pacid=23142611 polypeptide=Lus10009387 locus=Lus10009387.g ID=Lus10009387.BGIv1.0 annot-version=v1.0 MAQDSPRIMIPEALQLSRDDILVQFSLMWEFIKAPLIVPLLRFGVVVCLIMSLMLFCERVYMGIVIVMVKLFFKKPDERYNWRPLEEEEDMESGSGSSFP SVLIQIPMFNEREVYKLSIGAAANLSWPAERLVIQVLDDSTDPEIKQMVEMECQRWASKGINIRYQIRENRVGYKAGALKEGLKRSYAKHCEYVAIFDAD FQPEPDYLRRAIPFLVQNSDIALVQGRWRFVNSNECLLTRMQEMSLDYHFTVEQEVGSATHAFFGFNGTAGVWRIAAINEAGGWKDRTTVEDMDLAVRAS LRGWKFVYLGDLQVKSELPSTFKAFRFQQHRWSCGPANLFRKMVMEIVRNKKVRFWKKVYVIYSFFFVRKIIAHMVTFIFYCVVLPLTILVPEVQVPIWG AVYIPSIITILNSVGTPRSIHLLFYWILFENVMSLHRTKATLIGLMEYGRANEWVVTEKLGNTLQKAADAAAKNKAAPKAVKRHHFKFTERLNKIELGFA LFLFICGCYDYAHGKNNYFVYLWLQTVTFFIAGVGYIGTII

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22740		ATCSLA2, ATCSLA...	CELLULOSE SYNTHASE-LIKE A 2, A...		Lus10009387 [exp]	0	1
AT3G62660		GATL7	galacturonosyltransferase-like...		Lus10000262 [exp]	5.6	0.8046
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Lus10018329 [exp]	5.9	0.7660
AT3G01820			P-loop containing nucleoside t...		Lus10022342 [exp]	6.0	0.7520
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Lus10042806 [exp]	7.3	0.7976
AT1G74160			unknown protein		Lus10034677 [exp]	8.3	0.7884
AT4G29310			Protein of unknown function (D...		Lus10034991 [exp]	15.3	0.7630
AT4G30020			PA-domain containing subtilase...		Lus10001310 [exp]	15.9	0.7793
AT3G54920		PMR6	powdery mildew resistant 6, Pe...		Lus10038679 [exp]	16.2	0.7239
AT1G74960		ATKAS2, KAS2, F...	ARABIDOPSIS BETA-KETOACYL-ACP ...		Lus10033422 [exp]	20.7	0.7529
AT1G01090		PDH-E1 ALPHA, P...	pyruvate dehydrogenase E1 alph...		Lus10030197 [exp]	21.5	0.7584

Compare expression of checked genes

Lus10009387 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.