Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42820 306 / 3e-104 C3HZnF ATU2AF35B Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT1G27650 303 / 1e-102 C3HZnF ATU2AF35A U2 snRNP auxiliary factor small subunit, putative (.1.2) AT1G10320 121 / 2e-30 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT3G44785 105 / 2e-28 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020540 [exp] 344 / 5e-120 AT1G27650 323 / 7e-112 U2 snRNP auxiliary factor small subunit, putative (.1.2) Lus10008648 [exp] 321 / 1e-109 AT5G42820 358 / 6e-125 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10003375 [exp] 319 / 8e-109 AT5G42820 357 / 3e-124 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10002845 [exp] 319 / 8e-109 AT5G42820 355 / 1e-123 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10038139 [exp] 121 / 1e-30 AT1G10320 570 / 0.0 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10010687 [exp] 65 / 2e-11 AT1G10320 288 / 9e-88 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G188900 [exp] 354 / 9e-123 AT5G42820 311 / 4e-106 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.006G116700 [exp] 327 / 4e-112 AT5G42820 295 / 7e-100 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.005G258000 [exp] 310 / 4e-106 AT1G27650 352 / 1e-122 U2 snRNP auxiliary factor small subunit, putative (.1.2) Potri.002G003000 [exp] 298 / 2e-101 AT1G27650 349 / 2e-121 U2 snRNP auxiliary factor small subunit, putative (.1.2) Potri.009G149600 [exp] 124 / 1e-35 AT1G27650 137 / 1e-41 U2 snRNP auxiliary factor small subunit, putative (.1.2) Potri.004G228600 [exp] 120 / 3e-30 AT1G10320 462 / 1e-151 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10009389 pacid=23142629 polypeptide=Lus10009389 locus=Lus10009389.g ID=Lus10009389.BGIv1.0 annot-version=v1.0 ATGGCGGAGCACTTAGCGTCGATCTTCGGGACGGAGAAGGACAGGGTGAACTGTCCGTTCTACTTCAAGATCGGAGCATGCCGCCACGGCGACCGTTGCT CGAGGATGCACACCAAGCCGAGCGTCAGCCCTACGCTTCTCTTGTCGAACATGTACCAGCGCCCTGATATGATTACCCCCGGCGTCGACCCCAACGGCAA CCCCATCGATCCTCGCAAGATCCAGGAGCACTTCGAGGATTTCTATGAAGATCTGTTTGAGGAGTTGAGCAAATATGGGGAGATTGAGAGCTTGAATGTT TGTGATAATCTAGCTGACCACATGGTTGGGAACGTTTATGTTCAGTTTAGAGAAGAAGATCAGGCCGCGAACGCCTTGAGAAATCTCACCGGAAGGTTTT ACGCCGGTAGACCCATCATTGTTGATTTCTCCCCGGTAACAGACTTCCGGGAGGCCACCTGCAGGCAGTATGACGAGAACACTTGCAACCGCGGTGGTTA CTGTAACTTTATGCATCTCAAAAGGATTGGAAGGGAATTGAGGCACCAGTTATTTGGGAGTTATCGGAGCAGGCACAGTCGGAGTCGGAGCAGAAGCAGG AGCCCTTACAGACACAGAAGTCACGAAGATCACTACCACCACCGTAGTAAAAGGTACGACGAGAGGGAGCTGCGCTATCACAAAAGTGGCAGTAGGCGAT ACAAAACCACGAGCCCTGAGCAGCGGAGGGGGCGGAGTAGAAGTCCGGGAAGGAGGCGGGATCGAAGTCCGGTTAGAGATAGCAGCGAAGAGAGAAGGGC CAGAATTGAGCAGTGGAATAGGGAAAAGGAGAGCGAGAATCGAGATAATGCAGAAAATGGAGCTAGACAAGATGGTGATAGTAATCATTATGGATACCAG GAGGAGCATTCCCGTCAGCAAGTGGAGTATGGATACTGA
AA sequence Show only first row Show all	>Lus10009389 pacid=23142629 polypeptide=Lus10009389 locus=Lus10009389.g ID=Lus10009389.BGIv1.0 annot-version=v1.0 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRMHTKPSVSPTLLLSNMYQRPDMITPGVDPNGNPIDPRKIQEHFEDFYEDLFEELSKYGEIESLNV CDNLADHMVGNVYVQFREEDQAANALRNLTGRFYAGRPIIVDFSPVTDFREATCRQYDENTCNRGGYCNFMHLKRIGRELRHQLFGSYRSRHSRSRSRSR SPYRHRSHEDHYHHRSKRYDERELRYHKSGSRRYKTTSPEQRRGRSRSPGRRRDRSPVRDSSEERRARIEQWNREKESENRDNAENGARQDGDSNHYGYQ EEHSRQQVEYGY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42820	C3HZnF	ATU2AF35B	Zinc finger C-x8-C-x5-C-x3-H t...		Lus10009389 [exp]	0	1
AT1G27650	C3HZnF	ATU2AF35A	U2 snRNP auxiliary factor smal...		Lus10020540 [exp]	1.0	0.9032
AT2G23090			Uncharacterised protein family...		Lus10014734 [exp]	3.2	0.8415
AT1G02840		ATSRP34, SR1, S...	Serine/Arginine-Rich Protein S...		Lus10029885 [exp]	3.9	0.8710
AT3G17880		ATHIP2, ATTDX	HSC-70 INTERACTING PROTEIN, AR...		Lus10031334 [exp]	4.2	0.8888
AT5G11260	bZIP	TED5, HY5	REVERSAL OF THE DET PHENOTYPE ...		Lus10002028 [exp]	6.9	0.8447
AT3G07090			PPPDE putative thiol peptidase...		Lus10025931 [exp]	7.5	0.8555
AT1G55310		ATSCL33, SR33, ...	SC35-like splicing factor 33 (...		Lus10029328 [exp]	8.1	0.7971
AT2G20560			DNAJ heat shock family protein...		Lus10017687 [exp]	9.5	0.8618
AT3G08590		iPGAM2	2,3-biphosphoglycerate-indepen...		Lus10031877 [exp]	11.2	0.8645
AT1G11840		ATGLX1	glyoxalase I homolog (.1.2.3.4...		Lus10003523 [exp]	12.0	0.8421

Compare expression of checked genes

Lus10009389 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.