Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27830 106 / 5e-27 unknown protein AT3G44750 102 / 4e-25 HDT1, HDA3, ATHD2A, HD2A HISTONE DEACETYLASE 2A, histone deacetylase 3 (.1.2) AT5G03740 99 / 3e-23 C2H2ZnF HD2C, HDT3 HISTONE DEACETYLASE 3, histone deacetylase 2C (.1) AT5G22650 93 / 5e-21 ATHD2B, HDT2, HDT02, HDA4, HD2B ARABIDOPSIS HISTONE DEACETYLASE 2, histone deacetylase 2B (.1.2) AT2G27840 69 / 2e-13 HDT04, HDA13, HDT4 HISTONE DEACETYLASE 13, histone deacetylase-related / HD-related (.1.2) AT4G22758 43 / 0.0001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020544 [exp] 239 / 4e-78 AT2G27830 181 / 3e-58 unknown protein Lus10020543 [exp] 224 / 3e-71 AT5G22650 136 / 1e-38 ARABIDOPSIS HISTONE DEACETYLASE 2, histone deacetylase 2B (.1.2) Lus10020542 [exp] 159 / 7e-48 AT3G44750 123 / 3e-36 HISTONE DEACETYLASE 2A, histone deacetylase 3 (.1.2) Lus10009390 [exp] 124 / 2e-32 AT3G44750 166 / 1e-50 HISTONE DEACETYLASE 2A, histone deacetylase 3 (.1.2) Lus10002846 [exp] 124 / 8e-32 AT3G44750 105 / 4e-26 HISTONE DEACETYLASE 2A, histone deacetylase 3 (.1.2) Lus10003376 [exp] 120 / 3e-31 AT3G44750 114 / 2e-30 HISTONE DEACETYLASE 2A, histone deacetylase 3 (.1.2) Lus10015082 [exp] 87 / 4e-20 AT2G27830 64 / 3e-13 unknown protein Lus10000385 [exp] 51 / 2e-07 AT2G27830 110 / 5e-31 unknown protein Lus10006996 [exp] 49 / 8e-07 AT2G27830 100 / 6e-27 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G149400 [exp] 122 / 4e-32 AT3G44750 126 / 5e-35 HISTONE DEACETYLASE 2A, histone deacetylase 3 (.1.2) Potri.004G188600 [exp] 118 / 3e-31 AT2G27830 160 / 5e-50 unknown protein Potri.009G149200 [exp] 115 / 2e-30 AT2G27830 183 / 6e-59 unknown protein Potri.006G116500 [exp] 118 / 3e-30 AT5G03740 117 / 8e-31 HISTONE DEACETYLASE 3, histone deacetylase 2C (.1) Potri.004G188800 [exp] 116 / 1e-29 AT3G44750 122 / 1e-33 HISTONE DEACETYLASE 2A, histone deacetylase 3 (.1.2) Potri.003G116300 [exp] 56 / 4e-09 AT2G27830 125 / 2e-36 unknown protein Potri.003G116200 [exp] 47 / 1e-05 AT4G22758 131 / 5e-37 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009391 pacid=23142614 polypeptide=Lus10009391 locus=Lus10009391.g ID=Lus10009391.BGIv1.0 annot-version=v1.0 ATGAGGAACAACAACAACCGGACGATCGAGAAGAGCACCAGTCGAAAGAACAAGCTAACAGAGCGAGCGGTGTCGTTCCACGGCTCCGATCACATAACGT CGATGAATCCGACACCTTCGTCGGATCCCAAGCTTCGGAGGCCGAAGACTCTCCCCGACTTGCGACGGAACTTGGCAGCGGGATCGATCGTTTCAGCTTC CGATATCAGGCCGTTGAAGCTGACGAAGCTACTCCTCAACGTGACCGTCCAAGGAAGCGTCGGCGCCGTACAGGTTCTGGCGCCGCCGGAGTCTAGCGTC GGAGATCTGATCTCGATTGTTGTCCGTCAGTACAACAAGGAAGGCCGACGGCCAGTGATTGCAGGGGATTGCTCCCGATTCGACCTCCACTACTCGCAGT TCAGCTTAGAGAGTGTTGAGGTTAAGGCCGGTCAGCCTCTTTCGGTGACTCCCGATGATGATTTCGTCCTTCATCTCTCCCAAACAACACTAGGAGAGTC TAAGAACGGCAAAGACACCGAATCGATGCTCCTTTCCGTCACTGTCGACGGAAAGAAGATCGTGTTGGGAACACTCTCTTCTGAGAAGTTCCCCCAGCTC GCATTTGATCTCGTGTTCGAGAGGGAGTTCGAGTTGTCCCACAACAGAAAGGGTGGAAGCATCTACTTCACCGGCTACAAATCTTTGCCCGATGATGAAG AATATCCTTTTTTGTTGACATCAAGATTTTGTTTTTTCATGATTTGTTTCGAATTGGTATTGGATACTGAGTCTTGGATCGCTCTTTGTTTTGTAACAGA CATCTCTTCCTCGGATGAAGAGGATAATCATATGATGGGAAATATTAATGCTGAGAAACCAAAACTTGAAGCTTTGAAGCCTGAGGCTGCAAAACCAATA ACCAAACCTGCAGAAGAGCCGGCTAAAATCCAGACTGAATCTTCAGAAGATGATTCTTCTGATGATGACAAAGATGATTCTGACGATGTATCTGGGGAGG ATGTCTCTGGAGAAGACAACTCAGATGATTCGAACGATTCAGATGGTTCGGACAGCGAAGAGGAAGAAGAAGACGAGGAGACTCCGAAGAAGCCGTCTAG CAAGAAGAGATCCGCCAATGACTTTGGAATAAAAAACCCAGTACCAAATAAGAAGGCCAAACAAGCTACTCTCTAA
AA sequence Show only first row Show all	>Lus10009391 pacid=23142614 polypeptide=Lus10009391 locus=Lus10009391.g ID=Lus10009391.BGIv1.0 annot-version=v1.0 MRNNNNRTIEKSTSRKNKLTERAVSFHGSDHITSMNPTPSSDPKLRRPKTLPDLRRNLAAGSIVSASDIRPLKLTKLLLNVTVQGSVGAVQVLAPPESSV GDLISIVVRQYNKEGRRPVIAGDCSRFDLHYSQFSLESVEVKAGQPLSVTPDDDFVLHLSQTTLGESKNGKDTESMLLSVTVDGKKIVLGTLSSEKFPQL AFDLVFEREFELSHNRKGGSIYFTGYKSLPDDEEYPFLLTSRFCFFMICFELVLDTESWIALCFVTDISSSDEEDNHMMGNINAEKPKLEALKPEAAKPI TKPAEEPAKIQTESSEDDSSDDDKDDSDDVSGEDVSGEDNSDDSNDSDGSDSEEEEEDEETPKKPSSKKRSANDFGIKNPVPNKKAKQATL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27830			unknown protein		Lus10009391 [exp]	0	1
AT2G27830			unknown protein		Lus10020544 [exp]	2.0	0.7978
AT3G18620			DHHC-type zinc finger family p...		Lus10016564 [exp]	9.2	0.8048
AT1G25275			unknown protein		Lus10006792 [exp]	14.3	0.7977
AT5G02800		CDL1	CDG1-like 1, Protein kinase su...		Lus10019897 [exp]	17.3	0.7978
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10018018 [exp]	18.2	0.7764
AT4G33355			Bifunctional inhibitor/lipid-t...		Lus10029445 [exp]	18.9	0.6889
AT5G03730		AtCTR1, SIS1, C...	SUGAR-INSENSITIVE 1, CONSTITUT...		Lus10043428 [exp]	22.4	0.7741
AT1G09970		RLK7, LRRXI-23 ...	receptor-like kinase 7, Leucin...		Lus10028232 [exp]	28.0	0.7179
AT3G10572		APEM9	ABERRANT PEROXISOME MORPHOLOGY...		Lus10021597 [exp]	28.4	0.7705
AT1G03080			kinase interacting (KIP1-like)...		Lus10006896 [exp]	28.6	0.7555

Compare expression of checked genes

Lus10009391 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.