Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030094 [exp] 59 / 8e-11 ND / Lus10006041 [exp] 50 / 1e-07 ND / Lus10037123 [exp] 41 / 0.0004 AT2G03370 246 / 2e-77 Glycosyltransferase family 61 protein (.1) Lus10022081 [exp] 40 / 0.001 AT1G20960 218 / 1e-68 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10020402 [exp] 0 / 1 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009393 pacid=23142632 polypeptide=Lus10009393 locus=Lus10009393.g ID=Lus10009393.BGIv1.0 annot-version=v1.0 ATGGTAGCTCCCACGACAACGCATCGGGTGCACCGCTTAGAGATACAGGAGAGCACAACCTCAACATCCCTGAAGATCAACCTACCATACACCATGACAA AAGCACCAAGCGCATCCGTCACGGACGGTCAGAAGCTCAAGAATATAAGAATCAAGGAGTCTTGGATACGTCTACCCAAACCCTGCAAGATTCGACCAGC GGCATTTTGGACAACCAAACCTACCACGTCACCGGCCGTATCTGCCACTGCGCCATCCACATTAATTCTAATATGGTGGGCCAATGGAGAAACCCAAATG ATCTGCACAGCCAACCTGAGGGGAGCTGCTACAGGAGGTGGTGGTGCAATTAATTCGGAGAGACGAATGGTCACTGAAAACTGTTACGGAAGCCGGAAGG ACGAATCAGCCGCCAAACATGAAGAGTCAACTTGGACTAGCCGCCACTGTCGCCGGCAGAGAAAAACCAGAATCCGACAGGGAACACCGCAAATAGCGTC GAAACCGAAAAAACTGGCAACCTTACAGAGGTTCAATCGGCAACAATTGGGGGCTATGAAAGAAACTATGAGAGCTATAGAAGATGCATATGGTTAA
AA sequence Show only first row Show all	>Lus10009393 pacid=23142632 polypeptide=Lus10009393 locus=Lus10009393.g ID=Lus10009393.BGIv1.0 annot-version=v1.0 MVAPTTTHRVHRLEIQESTTSTSLKINLPYTMTKAPSASVTDGQKLKNIRIKESWIRLPKPCKIRPAAFWTTKPTTSPAVSATAPSTLILIWWANGETQM ICTANLRGAATGGGGAINSERRMVTENCYGSRKDESAAKHEESTWTSRHCRRQRKTRIRQGTPQIASKPKKLATLQRFNRQQLGAMKETMRAIEDAYG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10009393 [exp]	0	1
					Lus10011078 [exp]	8.5	0.9968
AT3G15670			Late embryogenesis abundant pr...		Lus10004395 [exp]	8.9	0.9756
AT3G62040			Haloacid dehalogenase-like hyd...		Lus10037859 [exp]	10.0	0.9067
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10005256 [exp]	11.1	0.8408
					Lus10011425 [exp]	12.1	0.9968
					Lus10029617 [exp]	13.7	0.9224
AT3G49720			unknown protein		Lus10012481 [exp]	14.8	0.9968
AT3G05610			Plant invertase/pectin methyle...		Lus10031469 [exp]	16.4	0.9330
					Lus10009260 [exp]	16.4	0.8124
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10025763 [exp]	17.1	0.9968

Compare expression of checked genes

Lus10009393 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.