Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 574 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 555 / 0 EFR EF-TU receptor (.1) AT3G47090 552 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47110 543 / 4e-177 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 525 / 2e-170 Leucine-rich repeat protein kinase family protein (.1) AT5G46330 410 / 3e-125 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT1G28440 396 / 9e-122 HSL1 HAESA-like 1 (.1) AT5G44700 391 / 8e-118 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT3G24240 388 / 2e-117 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT3G49670 384 / 5e-117 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019525 [exp] 1063 / 0 AT3G47570 637 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10043368 [exp] 1055 / 0 AT3G47570 639 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037840 [exp] 624 / 0 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033330 [exp] 618 / 0 AT3G47570 783 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037310 [exp] 617 / 0 AT3G47570 744 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033329 [exp] 614 / 0 AT3G47570 794 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035429 [exp] 610 / 0 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033362 [exp] 603 / 0 AT3G47570 784 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 597 / 0 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G037400 [exp] 923 / 0 AT3G47570 622 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G060100 [exp] 921 / 0 AT3G47570 670 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G133100 [exp] 623 / 0 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 619 / 0 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G152500 [exp] 613 / 0 AT3G47570 753 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G145200 [exp] 613 / 0 AT3G47570 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 612 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 606 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G007866 [exp] 605 / 0 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G020000 [exp] 605 / 0 AT3G47570 816 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10009394 pacid=23142602 polypeptide=Lus10009394 locus=Lus10009394.g ID=Lus10009394.BGIv1.0 annot-version=v1.0 ATGAACTTCCTAGCCATATTAACCATATCCCTACATCTTGCAGCCATTACTAAAGCTCAAGTTCCAACCAACACTCAAACAGACAAAGAATCATTACTAG CTATCAAGTCAGAAATTACCTCACAATCTTCCACCACTCTGCTGCCTTCATGGAACAAAACCTCGTCATCTCCTTGCCAATGGGAAGGAGTTACCTGCAA CAGATCAAACCAAAGAGTTATCAGTCTCGATCTCCGAAACTCGGGACTGGGCGGTTCCATTAGTCCTTCCATAGGCAACCTCACGTTCCTTCAAACCCTT CAGCTTCAGAGCAATCAACTCACTGGAATCCTTCCGGACCACCTCTGCAATCTCGTTCGCCTCCGGGTGATGAATCTGAGCTCCAACAGCTTGGAAGGTT CGATACCGTTCAACATCAGCAGGCTGGCAGAGCTGACAAGTCTCGACTTGTCGATGAACAGAATCTCAGGAAGGTTACACGAGCAGCTTGGCTTGCTTCC AAGGCTTGAGTTCATGAACCTAGGGAGAAACCTCCTCTCTGGTCCGATTCCTGCCTCGATATCGAATCTTTCCTCGCTGGTCGACTTGAATTTGGGCACC AACTCTCTCAGTGGATCTATTCCCAGCGATTTGAGTCGTTTGGAGAGGTTGGAAATGCTTGACCTGACTATAAACAATCTCACCGGTACAGTTCCTCCTC CTGTGTTCAACATGTCTTCCTTGAGATATATTGCATTGGCATCGAACGATCTACGGGGTAGACTTCCTGGAAATCTTGGGGACACACTTCCAAACCTTTG GGGGTTCAATTTCTGCTTTAACAAGTTCAGTGGACCTTATCCGGCTTCACTGCACAATCTCACCAACATGCGGATCATCAGAATGGCGCATATGCTCCTA GAAGGAACAGTTCCATCAGGTCTGGAGAATTTACCACTCCTGGAAATGTACAATATTGGGTTCAATAGACTGGTGAGCTCAGGTGAAGATGGCCTCGGAA TCATCACTTCTTTAACCAACAGTACCCGTCTGAAATTCCTTGCGATCGATGGGAACTTGTTCGAAGGTGTGATTCCTGAGTCTGTTGGCAATTTGTCCAA GGACTTGGAAAAACTCTACATGGGAGGCAACAAGATTCAAGGCAACATACCAGCATCGATTGGTCATCTCACGAGCTTGACATTGCTGAACATCAGCTAC AACTCCATCAAAGGTGAAATCCCAGGCGAAATTGGCCAGTTGAAGAACCTGCAAGAGTTGATTTTGGCCGGAAATCAACTCACCGGAGGCATTCCAGATT CATTTAGTAATCTCCAAAAATTGAACCAGGTTGACTTGTCAGGAAATCAGATCGTGGGTCGAATACCGTCAAGTTTCGGGAACTTCAGTAGCCTCGTCTC CATGGATCTATCCAGCAATAGGCTCAACGGAAGCATACCCAAAGAAGTCCTCTCTCTCCCAGGCTTGAGCATTATCTTGAACCTGTCCCACAACTCCTTC AGTGGGGAACTTAATCAAGCTATTGGGCTTCTACAGAGCGTTGTCTCAATTGATCTTTCTAGCAATCTACTCTCTGGTAATATTCCTGACACAATCAGGA ATTGCAAGAGCTTGGAGAGACTGTATATGTCTAAAAACGCATTCACTGGCTCAATTCCAAAGTCCTTGGGAGAAATAAAAGGCCTGGAAATCCTGGACCT ATCAAACAACACTTTATCGGGCATCATTCCTCCAGAAGTCCTCAACTTACTAGCCCTTCAGTCCTTGAACTTGTCATTCAACAATCTCGAAATCGACGTT TGTAACGGAGTACGTGCAAATCTCTCGAGATCCAATCTTGAAGGCAACCCAAAAATAGCTCCCACGCTAGCTTGCAGCAAGAACGGTCGATCCAATCGCA GGAGACTGGTGATTGTTCTGATAATCAGTGCAGTTGTAGCAACAGCAGCACTATGCTTCACAGTTGGTTCACTCTACTACATAAGAAACAAAAAAAAAAG AGTCACTCAAACTTCCGGGTTGTTGAAAGGGCCACACCAAACGGTCTCATACGACCAACTTCGTCGAGCAACCAACAACTTCAGCAGCGAGAATCTGATC GGAGAGGGCGGGTTTGGATCAGTATATAGAGGTAAACTAACGGATAATCATAACACTCCGGTAGCAATCAAGGTCCTGAACGTGGAAAAGACCGGCTCTT GGAGCAGCTTCCTAGCAGAGTGCAAGGCCTTAAGAAACGTGAAGCACCGAAACCTTGTGAAGCTGATCACAACATGTTCGAGCTTGGACCACAAAAACAA AGAGTTCTGGGCTCTGGTTTACGAGTTCCTCCCGAATGGAAGCCTAGCGGATTGGTTAAGAAACAGTGACAATGATGGGTTCAATCTACTGCAGAGACTA GACATAGCCATCGATGTCGCGAGCGTTCTAGATTACCTTCACCACGATAGCGAAGTGCCGGTAGTTCACTGTGATCTGAAGCCAAGCAACATTTTGCTAG GCCAACACATGACTGCAAAACTCGGAGATTTCGGTCTGGCCAAGCTGTTGATAGAGAATATGGGCAGCGAGCAATCCTCCATCAGCTCCCTCCACTGCCT CAAAGGGTCCATTGGATACATTCCTCCAGAATACGGACTGGGCTCCAAACCGTCGACCGCCGGCGACGTATACAGCTTCGGAGTGACGCTGCTTGAGCTG ATCACCAGGAAGAGCCCTACTGACGCGAGATTGGGCAACAGAAATCTGGTCGAGTGGGTGAAATCTGCGCTGCCGGACGACGTGATGATGAGAATGGTGG ACGTTTTCGCCGGCGACAGGGAGGCGGCGGAGAAGGCGGACCGGTGTGTGATGAAAGTCATCGGAGTTGGACTTTCTTGCGCGGCGGATCTCCCTGAAGA GCGGATCACCATGAGAGACGCTCTGTGGAAGCTTCAAGCTGCGAGGAAAGACGTCGACAGTAGCCCTTCCAGTCCGAGAGAGCCGTTGACGACGACGTGG AGGAAAAATGACGGAGTTTACTAA
AA sequence Show only first row Show all	>Lus10009394 pacid=23142602 polypeptide=Lus10009394 locus=Lus10009394.g ID=Lus10009394.BGIv1.0 annot-version=v1.0 MNFLAILTISLHLAAITKAQVPTNTQTDKESLLAIKSEITSQSSTTLLPSWNKTSSSPCQWEGVTCNRSNQRVISLDLRNSGLGGSISPSIGNLTFLQTL QLQSNQLTGILPDHLCNLVRLRVMNLSSNSLEGSIPFNISRLAELTSLDLSMNRISGRLHEQLGLLPRLEFMNLGRNLLSGPIPASISNLSSLVDLNLGT NSLSGSIPSDLSRLERLEMLDLTINNLTGTVPPPVFNMSSLRYIALASNDLRGRLPGNLGDTLPNLWGFNFCFNKFSGPYPASLHNLTNMRIIRMAHMLL EGTVPSGLENLPLLEMYNIGFNRLVSSGEDGLGIITSLTNSTRLKFLAIDGNLFEGVIPESVGNLSKDLEKLYMGGNKIQGNIPASIGHLTSLTLLNISY NSIKGEIPGEIGQLKNLQELILAGNQLTGGIPDSFSNLQKLNQVDLSGNQIVGRIPSSFGNFSSLVSMDLSSNRLNGSIPKEVLSLPGLSIILNLSHNSF SGELNQAIGLLQSVVSIDLSSNLLSGNIPDTIRNCKSLERLYMSKNAFTGSIPKSLGEIKGLEILDLSNNTLSGIIPPEVLNLLALQSLNLSFNNLEIDV CNGVRANLSRSNLEGNPKIAPTLACSKNGRSNRRRLVIVLIISAVVATAALCFTVGSLYYIRNKKKRVTQTSGLLKGPHQTVSYDQLRRATNNFSSENLI GEGGFGSVYRGKLTDNHNTPVAIKVLNVEKTGSWSSFLAECKALRNVKHRNLVKLITTCSSLDHKNKEFWALVYEFLPNGSLADWLRNSDNDGFNLLQRL DIAIDVASVLDYLHHDSEVPVVHCDLKPSNILLGQHMTAKLGDFGLAKLLIENMGSEQSSISSLHCLKGSIGYIPPEYGLGSKPSTAGDVYSFGVTLLEL ITRKSPTDARLGNRNLVEWVKSALPDDVMMRMVDVFAGDREAAEKADRCVMKVIGVGLSCAADLPEERITMRDALWKLQAARKDVDSSPSSPREPLTTTW RKNDGVY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47570			Leucine-rich repeat protein ki...		Lus10009394 [exp]	0	1
AT4G18425			Protein of unknown function (D...		Lus10013970 [exp]	4.0	0.7483
AT2G26530		AR781	Protein of unknown function (D...		Lus10032766 [exp]	4.6	0.7797
AT5G42820	C3HZnF	ATU2AF35B	Zinc finger C-x8-C-x5-C-x3-H t...		Lus10008648 [exp]	6.9	0.7486
AT2G21660		CCR2, ATGRP7, G...	GLYCINE-RICH RNA-BINDING PROTE...		Lus10040454 [exp]	8.5	0.7187
AT2G21660		CCR2, ATGRP7, G...	GLYCINE-RICH RNA-BINDING PROTE...		Lus10026344 [exp]	9.5	0.7204
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10000181 [exp]	10.7	0.7313
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10011820 [exp]	11.0	0.7512
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10041851 [exp]	18.0	0.7333
AT2G34930			disease resistance family prot...		Lus10002757 [exp]	18.2	0.6713
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10007045 [exp]	18.7	0.7061

Compare expression of checked genes

Lus10009394 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.