Plant FIBer expression Database

Lus10009395 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020547
[exp]
221 / 9e-71 ND /
Lus10017792
[exp]
109 / 3e-29 ND /
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10009395 pacid=23142610 polypeptide=Lus10009395 locus=Lus10009395.g ID=Lus10009395.BGIv1.0 annot-version=v1.0
ATGGCGGATCAGGTGCGTGATTCCTCTTCTTACTACTCTACAGATACTACTACTACTACTCGGCCGCGGCAACGCGGATTCTCCAAGTCTCAAATGTCCC
TCCACAAGATTTTACAAATCATCGCTTCCTACTCTCCTCCTCCGTCCGATTCTTCGAATCAAGGATCCTCGTGCTCGAATCATGAGGCGGAGAAGGCGGC
GGATCTGTGCAGTGCGAAGAGAGGAATCGAGATCGATTTGAACGAGGCGGCGGTGGCGGTCAGTGCTGGTAGTAGCTGTTTGGATTGTGAGGCGGCGGCA
GCAGTGGAAGAGAGCGGCGAGGAGTCTATGGCTGTTGTTGTTGAGAAGAGCTCGGATGGAGAATGCGATCCGATTCGTAATAAGGATTCATCTCCCGTGG
CAGAGGAAGATTCGAGAAGATTCGTGGAGGAGGAGGATACGAACTTGGAGAGCTGCAGAGTGATTGGAATAGGAACTGATCTGGGATTGAGTATATTAAT
CGAAGCGGCGGAGCTGGCCGCCTCTGTTAGCGATGATGATTCTCCGCCGTTGGATTTCGAAACGGGGAAGATCGAGGAGGAGGAGTCGGAGGATTCGGGC
TCGCAATCTCCGTCGCTGAAATTTGGCGGAGGTACGGAGAAGAAGAGGAAGAGAAAGAGAAATAAGTGTTGGGTGGTGGATTTGTACAGGGAGACGGAGA
GGACAAGTGCGGCGGAGGGGAAGAGGAAGAGAGGAGGAGGACGGAAGAGGAGCCGGGTAGTGGTGCCGTCGAGGAACAGGGACTCGTCGGCGGTTTTGGA
TCCGCCGACACCACGTCGTAGTTCACCACGGCTGACTGGTGGAAGAGTGGCGGAGCCGCTGTCGACGGCGGCGGGGAAACAGAAAGCAATGTAA
AA sequence
>Lus10009395 pacid=23142610 polypeptide=Lus10009395 locus=Lus10009395.g ID=Lus10009395.BGIv1.0 annot-version=v1.0
MADQVRDSSSYYSTDTTTTTRPRQRGFSKSQMSLHKILQIIASYSPPPSDSSNQGSSCSNHEAEKAADLCSAKRGIEIDLNEAAVAVSAGSSCLDCEAAA
AVEESGEESMAVVVEKSSDGECDPIRNKDSSPVAEEDSRRFVEEEDTNLESCRVIGIGTDLGLSILIEAAELAASVSDDDSPPLDFETGKIEEEESEDSG
SQSPSLKFGGGTEKKRKRKRNKCWVVDLYRETERTSAAEGKRKRGGGRKRSRVVVPSRNRDSSAVLDPPTPRRSSPRLTGGRVAEPLSTAAGKQKAM

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10009395
[exp]
0 1
AT5G41590 Protein of unknown function (D... Lus10017526
[exp]
10.3 0.7665
AT3G55240 Plant protein 1589 of unknown ... Lus10030322
[exp]
15.2 0.7572
AT5G58070 ATTIL temperature-induced lipocalin ... Lus10019048
[exp]
17.6 0.7648
AT2G36980 Tetratricopeptide repeat (TPR)... Lus10012796
[exp]
25.5 0.7631
AT5G58070 ATTIL temperature-induced lipocalin ... Lus10036298
[exp]
26.5 0.7602
AT1G58170 Disease resistance-responsive ... Lus10042488
[exp]
27.9 0.7548
AT5G43830 Aluminium induced protein with... Lus10041181
[exp]
28.0 0.7392
AT1G28220 ATPUP3 purine permease 3 (.1) Lus10041133
[exp]
29.7 0.7597
AT2G43560 FKBP-like peptidyl-prolyl cis-... Lus10008359
[exp]
30.6 0.7578
AT4G14500 Polyketide cyclase/dehydrase a... Lus10021883
[exp]
34.9 0.7549

Lus10009395 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.