Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08250 586 / 0 AtADT6, ADT6 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) AT2G27820 567 / 0 ADT3, PD1 arogenate dehydratase 3, prephenate dehydratase 1 (.1) AT3G44720 542 / 0 ADT4 arogenate dehydratase 4 (.1) AT5G22630 541 / 0 ADT5 arogenate dehydratase 5 (.1) AT1G11790 402 / 1e-138 AtADT1, ADT1 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) AT3G07630 399 / 8e-138 AtADT2, ADT2 Arabidopsis thaliana arogenate dehydratase 2, arogenate dehydratase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020549 [exp] 785 / 0 AT1G08250 602 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Lus10043369 [exp] 664 / 0 AT1G08250 599 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Lus10019526 [exp] 664 / 0 AT1G08250 602 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Lus10015130 [exp] 407 / 6e-141 AT1G11790 434 / 4e-152 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Lus10031547 [exp] 404 / 1e-139 AT1G11790 437 / 3e-153 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Lus10018128 [exp] 384 / 3e-131 AT3G07630 456 / 5e-160 Arabidopsis thaliana arogenate dehydratase 2, arogenate dehydratase 2 (.1.2) Lus10036135 [exp] 379 / 8e-130 AT3G07630 449 / 7e-158 Arabidopsis thaliana arogenate dehydratase 2, arogenate dehydratase 2 (.1.2) Lus10015561 [exp] 347 / 3e-117 AT1G11790 437 / 3e-153 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Lus10020035 [exp] 336 / 6e-113 AT1G11790 426 / 5e-149 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G188100 [exp] 648 / 0 AT1G08250 612 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Potri.009G148800 [exp] 647 / 0 AT1G08250 606 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Potri.011G004700 [exp] 422 / 2e-146 AT1G11790 527 / 0.0 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Potri.004G013400 [exp] 408 / 7e-141 AT1G11790 513 / 0.0 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Potri.008G195500 [exp] 406 / 4e-140 AT3G07630 504 / 2e-179 Arabidopsis thaliana arogenate dehydratase 2, arogenate dehydratase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0177 [flax] [poplar] PBP PF00800 [flax] [poplar] PDT Prephenate dehydratase
Representative CDS sequence Show only first row Show all	>Lus10009396 pacid=23142621 polypeptide=Lus10009396 locus=Lus10009396.g ID=Lus10009396.BGIv1.0 annot-version=v1.0 ATGAACATTCTATCGCCTCCGTCGTCGTTAACCGGCACCGGCCCCCGCCGCCTCTCCCGTATCCCTCCCGTCCACTGCATCCACCGCTCCTCCGACTCCG TCCACTTCTCCGCCAAATCCGACTGGCAGAGCTCCTGCGCCATCCTCTCTAGCAAAGTCGTCGCTCAGGAAAACAACAGCAGCACCACCACCACCACCAG ATCTGGAGGGAACAGCTCCGGCTCCACGGTGAACGGACACAAGTCGATTGACCTGGATCTGGTACCGATCGAGAAGGCTACCGTCGAGGCGGATGGAAAC AACAAGCCGAATCAGCTGCAGAAGCCGCTGACGATTACGGATCTGGCTCCTGCTCCGATGCACGGGTCGACTCTTCGAGTCGCGTACCAGGGAGTCCCCG GCGCGTATTCCGAGGCGGCCGCTGGTAAGGCTTATCCGAACTGTGAGGCGATTCCTTGCGATCAATTTGAGGTCGCTTTCCAGGCGGTGGAGCTCTGGAT CGCGGATCGAGCTGTTCTGCCTGTTGAGAATTCGTTAGGCGGATCTATTCACCGTAATTACGATCTGCTCCTCCGCCACCGCCTCCACATCGTCGGAGAG GTTCAGCTCCCCGTCCATCACTGTCTGTTGGCGTTACCTGGAGTAAGGAAAGAGTACATCACGCGCGTGATCTCGCATCCTCAAGCTCTGGCTCAGTGCG AGCACACTCTGACCAAAATGGGACTCCAAGCAGCTAGAGAAGCCGTCGATGACACGGCCGGAGCAGCAGAGTACATCGCAGCAAACAACCTCAGGGATAC AGCCGCAATCGCCTCCGCACGCGCCGCCGAGTTGTACGGGATGCAGGTTCTCGCCGACGGGATCCAGGACGACTGCGGGAACGTCACGCGGTTTGTGATG CTGGCCCGTGAGCCGGTGATCCCACGCACAGACCGGCCGTTCAAAACCAGCATTGTCTTCGCCCACGACAAGGGAACCAGCGTTCTGTTCAAGGTCCTAT CGGCGTTCGCGTTCAGGAACATCAATCTGACCAAAATCGAGTCCAGGCCTCACCGGAACCGTCCGATCCGGCTCGTCGACGACGCGAACAACGTCGGGAC GGCGAAGCACTTCGAGTATTTGTTCTACGTCGACTTTGAGGCGTCGATGGCGGAGGTGAGGGCGCAGAACGCGCTGGCGGAGGTGCAGGAATTCACGTCG TTCTTGCGCGTGTTGGGTAGTTATCCGATGGATATGACGCCGTGGTCCCCTTCGTCTTCTTCATCGTCCTCTTAG
AA sequence Show only first row Show all	>Lus10009396 pacid=23142621 polypeptide=Lus10009396 locus=Lus10009396.g ID=Lus10009396.BGIv1.0 annot-version=v1.0 MNILSPPSSLTGTGPRRLSRIPPVHCIHRSSDSVHFSAKSDWQSSCAILSSKVVAQENNSSTTTTTRSGGNSSGSTVNGHKSIDLDLVPIEKATVEADGN NKPNQLQKPLTITDLAPAPMHGSTLRVAYQGVPGAYSEAAAGKAYPNCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGE VQLPVHHCLLALPGVRKEYITRVISHPQALAQCEHTLTKMGLQAAREAVDDTAGAAEYIAANNLRDTAAIASARAAELYGMQVLADGIQDDCGNVTRFVM LAREPVIPRTDRPFKTSIVFAHDKGTSVLFKVLSAFAFRNINLTKIESRPHRNRPIRLVDDANNVGTAKHFEYLFYVDFEASMAEVRAQNALAEVQEFTS FLRVLGSYPMDMTPWSPSSSSSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Lus10009396 [exp]	0	1
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Lus10040416 [exp]	1.0	0.9827
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10026097 [exp]	1.4	0.9747
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10005950 [exp]	2.0	0.9668
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10032929 [exp]	5.7	0.9699
AT1G52760		LysoPL2	lysophospholipase 2 (.1)		Lus10035909 [exp]	6.5	0.9653
AT1G72220			RING/U-box superfamily protein...		Lus10015901 [exp]	6.7	0.9614
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10035011 [exp]	7.0	0.9636
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Lus10023531 [exp]	8.8	0.9545
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Lus10020549 [exp]	8.9	0.9667
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10002321 [exp]	9.8	0.9616

Compare expression of checked genes

Lus10009396 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.