Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29940 458 / 6e-146 ABCG31, PDR3, ATPDR3 ATP-binding cassette G31, pleiotropic drug resistance 3 (.1) AT1G15520 357 / 2e-108 ATABCG40, ABCG40, PDR12, ATPDR12 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) AT2G26910 354 / 1e-107 PEC1, ABCG32, PDR4, ATPDR4 PERMEABLE CUTICLE 1, ATP-binding cassette G32, pleiotropic drug resistance 4 (.1) AT3G16340 351 / 2e-106 ABCG29, ATPDR1, PDR1, AtABCG29 ATP-binding cassette G29, pleiotropic drug resistance 1 (.1.2) AT1G59870 348 / 3e-105 ATABCG36, ABCG36, PEN3, PDR8, ATPDR8 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) AT1G15210 343 / 1e-103 ABCG35, PDR7, ATPDR7 ATP-binding cassette G35, pleiotropic drug resistance 7 (.1) AT1G66950 328 / 3e-98 ABCG39, PDR11, ATPDR11 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) AT2G36380 327 / 2e-97 ABCG34, PDR6, ATPDR6 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1) AT3G30842 302 / 7e-89 ABCG38, PDR10, ATPDR10 ATP-binding cassette G38, pleiotropic drug resistance 10 (.1) AT3G53480 300 / 3e-88 PIS1, ABCG37, PDR9, ATPDR9 polar auxin transport inhibitor sensitive 1, ATP-binding cassette G37, pleiotropic drug resistance 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020550 [exp] 605 / 0 AT2G29940 1962 / 0.0 ATP-binding cassette G31, pleiotropic drug resistance 3 (.1) Lus10018230 [exp] 494 / 4e-159 AT2G29940 2141 / 0.0 ATP-binding cassette G31, pleiotropic drug resistance 3 (.1) Lus10041684 [exp] 358 / 3e-116 AT1G15520 899 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10041683 [exp] 361 / 3e-110 AT1G15520 2019 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10037562 [exp] 360 / 4e-109 AT1G59870 2178 / 0.0 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) Lus10041668 [exp] 359 / 4e-109 AT1G15520 2128 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024061 [exp] 357 / 2e-108 AT1G15520 2139 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10025824 [exp] 357 / 4e-108 AT1G59870 2220 / 0.0 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) Lus10008090 [exp] 352 / 2e-106 AT1G15520 2045 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G251100 [exp] 462 / 3e-147 AT2G29940 2081 / 0.0 ATP-binding cassette G31, pleiotropic drug resistance 3 (.1) Potri.003G178900 [exp] 373 / 3e-114 AT1G15520 2000 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G179000 [exp] 373 / 4e-114 AT1G15520 2010 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G049000 [exp] 369 / 6e-114 AT1G15520 1847 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.018G032900 [exp] 368 / 3e-112 AT1G15520 2041 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048800 [exp] 367 / 4e-112 AT1G15520 2034 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048900 [exp] 366 / 8e-112 AT1G15520 2055 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048700 [exp] 366 / 1e-111 AT1G15520 2000 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.006G248500 [exp] 362 / 3e-110 AT1G15520 2050 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G175700 [exp] 360 / 1e-109 AT1G15520 2058 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10009400 pacid=23142597 polypeptide=Lus10009400 locus=Lus10009400.g ID=Lus10009400.BGIv1.0 annot-version=v1.0 ATGAAGAGGCAATCATTCCTCTACATATTCAAGACGTTGCAGGTTACTTTAGCCGGGTTAGTGACCTGCACCATGTTGACCAGGGCGAAACTTCACCCTG GGAACGAACATGACGGGAACCTCTACTTGGCGTGCCTCTTCTTTGGCCTAGTCCATCTACAGTTCAACGGGTTCGGGGAGTTGCCACTCCTTATAGATCG ACTCCCCGTGTTCTACAAACAGAGCGACAACCTCTTCCACCTCGCTTGGGATTGGTCGCTGGCAAGCTTCGTGGTTCACGTGTCTTACTCGATCATCGAG GCCGTGATGTGGACCGTTGCCGTCTACTACACTGTAGGATTTGCATCCGACGTTGGAAGATTCTTTCGGTTTATGCTCCTTCTGTTTTGGGTTCATCAGT CGGCAATGTCGATCTTCCGCACGATGGCTGCGGTCGCAAGGGATCCGGTCATTGCGAATACATTCACTTCCGCTGCATTGTTGATCGTGTTCTTGTGTGG CGGATTCATCATTCCAAAAGCTCTTACGAGGGCGAAAACTGTCAATCCGATTGAAGAGGATAATCAAGATTCAAACGAAAAGACGACTGAGAAGGTGAAA TCCGGTGGAGATGATCGGAGGACTAAGAGGACGGGAATGGAGTTTGTTGAAGCAGTAATGAGACTAGTGGAGCTTGACAACCTAAGACAAGCTTTGGTAG GTGTACCTGGTTTATCAATCGAACAAAGGAAACAGCTTACCATAGCCGTGGAGCTCCTCGCAAACCCTTCGATCATCTTCATGGACGAACCAACGTCTGG ACTCGATGCTCGCGCCGCAACCATTGTTATGCGGACGGTTCGCAACACTGTTGACACCTGGCGGACTATTGTCTGCACCATCCATCAGCCTAGCATCGAC ATTTTGAAGCCTTTGACGAACTTGGAGTTCACTCAAAGCAATTGGTTGACTATTTCCAAGGGATTGAAGGAGTCCCTTGGATCGTCAATGGCTGCAATCC GGCCACTTGGATGCTTGACGCCACATCAGCTAGCGTCGAGGAAACTCTCGGTGACGATTTCGCTCAACTCTATGCTAAATCTGACCAGTACAGAGAAGTC GTCGATCAAGCAGCTGAGCGAACCACCGAAAGGATCGAAGCCATTGATGTTCCCTACAACCTTTGCTAGAAACTCTTATTCACAGTTCTTGATCTGCCTC AAGAAACAGAATCTTGTCTATTGGAGAAGTCCACAGTATAATAATGCAAGGAATTTTTTTACTGTCGTAGCGGCCTTGATTTTGGGGTCTCAGTTCTGGG ACTTTGGATCTAAAAGGAGTCAGACACTCGACTACGTCCAACCGATTGTTTTGGTCAAGAGGATAGTGTTCTATAGGGAGAAGGCGGCGGGGTTGTACTC GCCGCTAACGTATGCAGCTGCTCAAGGCATCGTCGAGCTTCCATACATCTTCTTCCAGACGATTTTATATAGCTGCATCAGTTACTACATGATTAATTTC GAAAGATCGGCCGGGAAGTTTTTCCTATACTGTTTGTTCATGTTCTTGACATTCACCTACTTCACATCACCGGCTCAACAGTACGCTTCGATCATCTCCT CCGCAGCCTACTCACTGTGGAATCTATTCTCCGGGTTTCTTCTCCCAAAGAACAGTATTCCGGTATGGTGGAGGTGGTTCTACTACATCTGCCCAACCTC ATGGACTCTACAAGGTATAATCTCGCCGCAACTCAGTAACGTTGAGTCAACGACCACCGGACTGGGGTTTGAGCTGACTGTTAAGGAGTACCTGAGGGAG AACTTCGATTACGGACCAGACAAAGTTGGGATCTCCGTAGAGGCTCTGCTTGCGTTCTGCTTCGTGTTCTTCACCGCATTTGCGCTGTCCGTCAAAGTTC TTAACTTCCAAAGAAGATAG
AA sequence Show only first row Show all	>Lus10009400 pacid=23142597 polypeptide=Lus10009400 locus=Lus10009400.g ID=Lus10009400.BGIv1.0 annot-version=v1.0 MKRQSFLYIFKTLQVTLAGLVTCTMLTRAKLHPGNEHDGNLYLACLFFGLVHLQFNGFGELPLLIDRLPVFYKQSDNLFHLAWDWSLASFVVHVSYSIIE AVMWTVAVYYTVGFASDVGRFFRFMLLLFWVHQSAMSIFRTMAAVARDPVIANTFTSAALLIVFLCGGFIIPKALTRAKTVNPIEEDNQDSNEKTTEKVK SGGDDRRTKRTGMEFVEAVMRLVELDNLRQALVGVPGLSIEQRKQLTIAVELLANPSIIFMDEPTSGLDARAATIVMRTVRNTVDTWRTIVCTIHQPSID ILKPLTNLEFTQSNWLTISKGLKESLGSSMAAIRPLGCLTPHQLASRKLSVTISLNSMLNLTSTEKSSIKQLSEPPKGSKPLMFPTTFARNSYSQFLICL KKQNLVYWRSPQYNNARNFFTVVAALILGSQFWDFGSKRSQTLDYVQPIVLVKRIVFYREKAAGLYSPLTYAAAQGIVELPYIFFQTILYSCISYYMINF ERSAGKFFLYCLFMFLTFTYFTSPAQQYASIISSAAYSLWNLFSGFLLPKNSIPVWWRWFYYICPTSWTLQGIISPQLSNVESTTTGLGFELTVKEYLRE NFDYGPDKVGISVEALLAFCFVFFTAFALSVKVLNFQRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10009400 [exp]	0	1
AT1G63990		SPO11-2	sporulation 11-2 (.1)		Lus10032302 [exp]	1.0	0.9927
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Lus10035456 [exp]	1.4	0.9883
AT5G60010			ferric reductase-like transmem...		Lus10019390 [exp]	6.7	0.9852
					Lus10040397 [exp]	7.7	0.9852
					Lus10027066 [exp]	8.7	0.9852
					Lus10006918 [exp]	9.5	0.9852
					Lus10007508 [exp]	10.2	0.9852
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10015158 [exp]	11.0	0.9852
AT1G04670			unknown protein		Lus10004041 [exp]	11.6	0.9852
AT3G53690			RING/U-box superfamily protein...		Lus10042610 [exp]	12.2	0.9852

Compare expression of checked genes

Lus10009400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.