Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44860 119 / 6e-33 Ribosomal protein L24e family protein (.1.2) AT5G22620 102 / 2e-24 phosphoglycerate/bisphosphoglycerate mutase family protein (.1.2.3) AT5G04120 41 / 0.0004 Phosphoglycerate mutase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020553 [exp] 178 / 6e-52 AT5G22620 593 / 0.0 phosphoglycerate/bisphosphoglycerate mutase family protein (.1.2.3) Lus10008761 [exp] 152 / 1e-42 AT2G25010 79 / 1e-15 Aminotransferase-like, plant mobile domain family protein (.1) Lus10020552 [exp] 143 / 5e-42 AT2G44860 240 / 2e-82 Ribosomal protein L24e family protein (.1.2) Lus10038713 [exp] 103 / 2e-27 ND / Lus10008033 [exp] 105 / 3e-27 ND / Lus10005983 [exp] 107 / 1e-25 AT3G18750 523 / 3e-178 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) Lus10033128 [exp] 105 / 7e-25 AT1G74860 147 / 1e-38 unknown protein Lus10020427 [exp] 100 / 1e-23 AT1G10840 570 / 0.0 translation initiation factor 3 subunit H1 (.1.2) Lus10007989 [exp] 92 / 2e-20 AT4G26190 247 / 3e-67 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G148500 [exp] 119 / 1e-32 AT2G44860 248 / 1e-85 Ribosomal protein L24e family protein (.1.2) Potri.004G187800 [exp] 118 / 2e-32 AT2G44860 249 / 8e-86 Ribosomal protein L24e family protein (.1.2) Potri.004G187700 [exp] 122 / 3e-31 AT5G22620 634 / 0.0 phosphoglycerate/bisphosphoglycerate mutase family protein (.1.2.3) Potri.011G052200 [exp] 60 / 3e-10 AT5G22620 184 / 4e-55 phosphoglycerate/bisphosphoglycerate mutase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0175 [flax] [poplar] TRASH PF01246 [flax] [poplar] Ribosomal_L24e Ribosomal protein L24e CL0071 [flax] [poplar] His_phosphatase PF00300 [flax] [poplar] His_Phos_1 Histidine phosphatase superfamily (branch 1)
Representative CDS sequence Show only first row Show all	>Lus10009403 pacid=23142609 polypeptide=Lus10009403 locus=Lus10009403.g ID=Lus10009403.BGIv1.0 annot-version=v1.0 ATGAAGAGAAACCCAAGGAAGGTGAAATGGACGAAGGCCTATAGGAAGCTGCACGGGAAGGATATGACAAAGGATTCAACCTTTGAGTTCGAGAGGAAGA GGAACAGGCCCGATAGATACGACAGAAATGTTGTCGAAAACACCCTCAACGCCATCAAGAAGATCAGCAAAATCCGAAACGAAAGGGAACACAAGCACAT TAAGAACAGTCTCCAGGAAGTACAGCCGCCGCCGCCGAAAGGTCAAGAAGACGGAGGCGTAACATCGGAGCTGTACTCATTCTTCGAGCCGTTCCCTCCG ATCAAAGCCGCGAAGCGAGTGGTTCTCGTACGCCATGGGCAGAGCACTTGGAATGCTGAAGGTAGGATCCAAGGCAGGTCTGATTTCTCCGTTCTCACCA AGAAAGGCGAGTCCCAAGCTGAGACCTCTCGCCTCATGCTCCTCGATGATTCCTTCGACGTCTGCTTCAGCAGACAAAAGGCGGAGGTAAGCAGTAATAA CACTGACCCTATTGAAGAAGTGACTGATGGAATTCAGAAAATGCGAGGGAAGGGCAAGTCAATGGAAACTATTAATCGATTTGTCGAGCGTGCGATTACT GCTTCTAATAGGAGAGAAGCATATAAAAAGAAGAAAAAACAAAAGATCTACGAAACACCTGAGCCTTTCCCCCCAATTAAAATTCTGGTATGCCAGGATA GACCTCCATCCCCCGCTAGGCCTGTTAGAATTCCCCCCTTTCTAACTTCACGACGGAGATTTATGCCAGATGACGGTGAAGAGGAGTTATTTGGTGGCTA CGAGTTTGATACCTACCCGGCTCCATCGTTTAGGGTTTTCATTGGTTCGTCTCATGCTTCAGCGAGCGTTGGTGTTGCAGTTGGGAGAGATGCTCGTTTT GCACCTGCCACGAATACACATGGTGGGGAGATGGATTAG
AA sequence Show only first row Show all	>Lus10009403 pacid=23142609 polypeptide=Lus10009403 locus=Lus10009403.g ID=Lus10009403.BGIv1.0 annot-version=v1.0 MKRNPRKVKWTKAYRKLHGKDMTKDSTFEFERKRNRPDRYDRNVVENTLNAIKKISKIRNEREHKHIKNSLQEVQPPPPKGQEDGGVTSELYSFFEPFPP IKAAKRVVLVRHGQSTWNAEGRIQGRSDFSVLTKKGESQAETSRLMLLDDSFDVCFSRQKAEVSSNNTDPIEEVTDGIQKMRGKGKSMETINRFVERAIT ASNRREAYKKKKKQKIYETPEPFPPIKILVCQDRPPSPARPVRIPPFLTSRRRFMPDDGEEELFGGYEFDTYPAPSFRVFIGSSHASASVGVAVGRDARF APATNTHGGEMD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44860			Ribosomal protein L24e family ...		Lus10009403 [exp]	0	1
AT5G27700			Ribosomal protein S21e (.1)		Lus10031494 [exp]	3.5	0.8835
AT1G34030			Ribosomal protein S13/S18 fami...		Lus10034179 [exp]	7.3	0.8789
AT5G62300			Ribosomal protein S10p/S20e fa...		Lus10027194 [exp]	8.5	0.8354
AT2G29530		TIM10	Tim10/DDP family zinc finger p...		Lus10040718 [exp]	13.4	0.7981
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10043248 [exp]	14.8	0.8069
AT3G57490			Ribosomal protein S5 family pr...		Lus10030129 [exp]	18.4	0.8033
AT2G29530		TIM10	Tim10/DDP family zinc finger p...		Lus10016453 [exp]	18.5	0.8350
AT3G06700			Ribosomal L29e protein family ...		Lus10016875 [exp]	28.1	0.8398
AT3G23620			Ribosomal RNA processing Brix ...		Lus10035575 [exp]	28.7	0.8172
AT1G26880			Ribosomal protein L34e superfa...		Lus10008617 [exp]	31.9	0.8107

Compare expression of checked genes

Lus10009403 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.