Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22620 346 / 1e-116 phosphoglycerate/bisphosphoglycerate mutase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020553 [exp] 549 / 0 AT5G22620 593 / 0.0 phosphoglycerate/bisphosphoglycerate mutase family protein (.1.2.3) Lus10015442 [exp] 72 / 7e-14 AT5G22620 178 / 1e-52 phosphoglycerate/bisphosphoglycerate mutase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G187700 [exp] 423 / 7e-146 AT5G22620 634 / 0.0 phosphoglycerate/bisphosphoglycerate mutase family protein (.1.2.3) Potri.011G052200 [exp] 74 / 7e-15 AT5G22620 184 / 4e-55 phosphoglycerate/bisphosphoglycerate mutase family protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009404 pacid=23142606 polypeptide=Lus10009404 locus=Lus10009404.g ID=Lus10009404.BGIv1.0 annot-version=v1.0 ATGAAGGGAAGGATAAATTTGGTGCAGCGTTTCGGCAATGGCGATGCACCGAATTTCATCATTGACGGGCACTATCCGCTGAGAGAGCTGTGGGGGAGAG CTAGGAACTGCTGGGATAGAATCTTGGAGCATGAAAGTAAGTCTGTTCTTGTGGTAGCTCACAATGCTGTTAACCAGGCGCTCGTTGCTACAGCCATTGG ATTGGGGACTGAATACTTTAGGATTCTACTTCAGAGCAACTGTGGAGTTAGTGTCCTGGATTTCACTCCTCGTTCGGACAGTGGATCGCCTTCCATTTGT CTCAATCATTTGAACCAGGTACTCGAACTTGCTTTGAGAACTTGTATGGATTGTTCTGTGGGTTATCCTTTGACATGGAGCAACATCGGTGCAGACACCG AGTTCTCCAATTGCAGGTGGAGTTTCGGGAGGAAGGAAAGCAAGCAAGCGGGTGATTCTTGTTTGCCATGGAACTATGAACATGCTAGGCATGATACAGG TATTTCGATTCACATGAAATCCCAGAAAACGGCAGAGCTCCTTCTCAATCTGAAAGTAGGCACAATTATCAGCAGTACTGAGGATGCCAGTACTGAGACA GCCATGGCCATCTCCAGAGTCCAAGAAGCTGCAGATTGCCTTGGTGCTTATTGTGTGCCGCGATATGTAGAGATGACGTGTATTAACGACCTCGATGTCA CAGACATCCTTCACCGGTTAAACAAGGAAGAAAGTACTGAAGGCCAGCAGCTACTCCAACCCGGTTTCTTGAACAGATTCAACGATGAAGAGCTATCCGC ATTGTGGGATCAGTCCGGTAGAGCATGGCAGTCTGTGCTAGACGAAATAGCAGACAAATCCGAACCAGAAAAGGTTGCGGTTGTAGTGAGCCATCCTGCC GTCCACATTGCGCTGATGGCTCACTGTCTGAAACTAACGAAAGACTGGATGGGTTCGTTTCATCTCGATGCTGGAAGCATTAGCGTCTTGGATTTTCCGG ATGGAGCTACTGGAAGTGGCGTCGTCCGGTCCATAAACTACACTGCTCATTTGGGACGATGGTCCATCCCCATCAGCAGATCAACCGTTGCCGATGAAGA GTTCTGA
AA sequence Show only first row Show all	>Lus10009404 pacid=23142606 polypeptide=Lus10009404 locus=Lus10009404.g ID=Lus10009404.BGIv1.0 annot-version=v1.0 MKGRINLVQRFGNGDAPNFIIDGHYPLRELWGRARNCWDRILEHESKSVLVVAHNAVNQALVATAIGLGTEYFRILLQSNCGVSVLDFTPRSDSGSPSIC LNHLNQVLELALRTCMDCSVGYPLTWSNIGADTEFSNCRWSFGRKESKQAGDSCLPWNYEHARHDTGISIHMKSQKTAELLLNLKVGTIISSTEDASTET AMAISRVQEAADCLGAYCVPRYVEMTCINDLDVTDILHRLNKEESTEGQQLLQPGFLNRFNDEELSALWDQSGRAWQSVLDEIADKSEPEKVAVVVSHPA VHIALMAHCLKLTKDWMGSFHLDAGSISVLDFPDGATGSGVVRSINYTAHLGRWSIPISRSTVADEEF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22620			phosphoglycerate/bisphosphogly...		Lus10009404 [exp]	0	1
AT2G02570			nucleic acid binding;RNA bindi...		Lus10007436 [exp]	2.0	0.8828
					Lus10006003 [exp]	2.4	0.8868
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10010374 [exp]	3.0	0.8912
AT1G07745		SSN1, ATRAD51D,...	SUPPRESOR OF SNI1, homolog of ...		Lus10025465 [exp]	3.5	0.8856
AT1G65420		NPQ7	NONPHOTOCHEMICAL QUENCHING 7, ...		Lus10039937 [exp]	4.9	0.8743
AT4G36280			Histidine kinase-, DNA gyrase ...		Lus10025978 [exp]	5.8	0.8505
AT1G16670			Protein kinase superfamily pro...		Lus10028149 [exp]	7.7	0.8760
AT5G57700			BNR/Asp-box repeat family prot...		Lus10006994 [exp]	8.4	0.8589
AT1G55340			Protein of unknown function (D...		Lus10010312 [exp]	8.4	0.8623
AT1G77800			PHD finger family protein (.1....		Lus10009786 [exp]	8.8	0.8372

Compare expression of checked genes

Lus10009404 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.