Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27770 214 / 3e-67 Plant protein of unknown function (DUF868) (.1) AT2G36470 124 / 1e-32 Plant protein of unknown function (DUF868) (.1) AT3G04860 121 / 6e-32 Plant protein of unknown function (DUF868) (.1) AT5G28150 120 / 1e-31 Plant protein of unknown function (DUF868) (.1) AT5G11000 114 / 1e-28 Plant protein of unknown function (DUF868) (.1) AT2G04220 110 / 9e-28 Plant protein of unknown function (DUF868) (.1) AT4G12690 109 / 2e-27 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2) AT5G48270 107 / 1e-26 Plant protein of unknown function (DUF868) (.1) AT3G13229 104 / 1e-25 Plant protein of unknown function (DUF868) (.1) AT2G25200 86 / 1e-18 Plant protein of unknown function (DUF868) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001787 [exp] 135 / 4e-37 AT5G28150 357 / 2e-124 Plant protein of unknown function (DUF868) (.1) Lus10020240 [exp] 132 / 7e-36 AT5G28150 356 / 2e-124 Plant protein of unknown function (DUF868) (.1) Lus10014372 [exp] 131 / 1e-35 AT2G27770 201 / 8e-63 Plant protein of unknown function (DUF868) (.1) Lus10022050 [exp] 132 / 2e-35 AT5G28150 310 / 2e-105 Plant protein of unknown function (DUF868) (.1) Lus10023869 [exp] 130 / 6e-35 AT2G27770 196 / 1e-60 Plant protein of unknown function (DUF868) (.1) Lus10042600 [exp] 127 / 9e-34 AT5G28150 310 / 3e-105 Plant protein of unknown function (DUF868) (.1) Lus10013755 [exp] 120 / 3e-31 AT2G04220 351 / 2e-121 Plant protein of unknown function (DUF868) (.1) Lus10039183 [exp] 118 / 2e-30 AT2G04220 351 / 2e-121 Plant protein of unknown function (DUF868) (.1) Lus10017128 [exp] 115 / 4e-29 AT5G11000 245 / 1e-78 Plant protein of unknown function (DUF868) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G187600 [exp] 228 / 7e-73 AT2G27770 305 / 2e-103 Plant protein of unknown function (DUF868) (.1) Potri.009G148300 [exp] 225 / 1e-71 AT2G27770 308 / 7e-105 Plant protein of unknown function (DUF868) (.1) Potri.017G116200 [exp] 163 / 9e-48 AT2G27770 249 / 2e-81 Plant protein of unknown function (DUF868) (.1) Potri.005G050900 [exp] 147 / 1e-41 AT5G28150 417 / 2e-148 Plant protein of unknown function (DUF868) (.1) Potri.005G210800 [exp] 146 / 3e-41 AT5G28150 359 / 2e-125 Plant protein of unknown function (DUF868) (.1) Potri.013G038000 [exp] 142 / 6e-40 AT5G28150 409 / 6e-145 Plant protein of unknown function (DUF868) (.1) Potri.002G051600 [exp] 132 / 7e-36 AT5G28150 364 / 2e-127 Plant protein of unknown function (DUF868) (.1) Potri.015G084500 [exp] 127 / 8e-34 AT4G12690 254 / 1e-83 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2) Potri.007G101000 [exp] 116 / 8e-30 AT2G04220 369 / 7e-129 Plant protein of unknown function (DUF868) (.1) Potri.012G089100 [exp] 116 / 9e-30 AT4G12690 254 / 1e-83 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05910 [flax] [poplar] DUF868 Plant protein of unknown function (DUF868)
Representative CDS sequence Show only first row Show all	>Lus10009405 pacid=23142599 polypeptide=Lus10009405 locus=Lus10009405.g ID=Lus10009405.BGIv1.0 annot-version=v1.0 ATGAGAGATTTAGTCTCCTGTTTCAGTGAATCCGCCATCAACATCTCCCCCTCTTTCCCTTCCCACCACCCCCACAATTTCTCCTTCTCCTGCTCCTCCT CCGCCGCCTCCACCGCCGCCCCTTCCTCCACCTCCGCCCCTTCCGACGCCGTTCCCTCAACCCAGACCTCCGTCTCTTCCCTCTACAAAATCTACTCCCA CAACAAAAAACCAGTCTTTCTCTCCCTCACCTGGACCCACCACGGCCTCACTGTCTCCACTTCCTCCCCCGCCTCTTTCAAGCTCAACACCGCCTCCGGC CTCTTCCGCAAGAAGAAAGGATCCAAATCCATTGATGACCGGTTCGAAATCCACTGGGATCTCTCTGCTGCCAAGTACGATTCCGGTCGCCCCGAGCCCG TTTCCGAGTTCTACCTCGTCGTCCTGGTCGATTCCGAGGTCGCCCTCGTCCTCGGCGACGACGCCAGAAAATTCTCCTTCGCCGCAGCCGCAGGAACGGC GATTCTCGTTTCTAGACAAGAGCATTGCTCAGGGAGCACTGTTTACAGTACGAGGACCCGATTCTGCGAATCGGGTAGCCAGCACGATATCCTGATTAAA ATCTCCGTCGCTGCNNNNAAATCGCCCCCCGTTGCGTTAGGAGGCGGCGGCGGTGGTGGCCGGCTGCATCCAGTGTTGTCGGTTTGCATCGATAAGAAGG TTGTGATCCGAGTGAAGAGGCTGCAGTGGAATTTCAGAGGGAATCAGACGATTTTCGTTGATGGGTTGTTGGTGGATCTGATGTGGGATGTTCATGACTG GTTTTTTAATCCGGCCGCGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNAGGTTATGGCCGGAGGAGAAATCGGCGAAGAAGGAAGAACAACAACAATATCATCATCAGCAGCAGCAGCAGAGA ATTGCAGAGTTCTCTTTACTGATTTACGCTTGTAA
AA sequence Show only first row Show all	>Lus10009405 pacid=23142599 polypeptide=Lus10009405 locus=Lus10009405.g ID=Lus10009405.BGIv1.0 annot-version=v1.0 MRDLVSCFSESAINISPSFPSHHPHNFSFSCSSSAASTAAPSSTSAPSDAVPSTQTSVSSLYKIYSHNKKPVFLSLTWTHHGLTVSTSSPASFKLNTASG LFRKKKGSKSIDDRFEIHWDLSAAKYDSGRPEPVSEFYLVVLVDSEVALVLGDDARKFSFAAAAGTAILVSRQEHCSGSTVYSTRTRFCESGSQHDILIK ISVAXXKSPPVALGGGGGGGRLHPVLSVCIDKKVVIRVKRLQWNFRGNQTIFVDGLLVDLMWDVHDWFFNPAAXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXVMAGGEIGEEGRTTTISSSAAAAENCRVLFTDLRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27770			Plant protein of unknown funct...		Lus10009405 [exp]	0	1
AT5G21105			Plant L-ascorbate oxidase (.1....		Lus10025538 [exp]	1.4	0.8233
AT4G10750			Phosphoenolpyruvate carboxylas...		Lus10003220 [exp]	4.0	0.7384
AT2G28790			Pathogenesis-related thaumatin...		Lus10016572 [exp]	5.5	0.7754
AT1G07710			Ankyrin repeat family protein ...		Lus10015224 [exp]	6.5	0.7388
AT5G24560		ATPP2-B12	phloem protein 2-B12 (.1)		Lus10025666 [exp]	9.7	0.7262
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Lus10019777 [exp]	10.2	0.7058
AT1G28390			Protein kinase superfamily pro...		Lus10039770 [exp]	17.0	0.7130
AT4G15415		ATB'GAMMA, ATB'...	Protein phosphatase 2A regulat...		Lus10014619 [exp]	20.7	0.7176
AT5G47760		ATPK5, ATPGLP2	2-phosphoglycolate phosphatase...		Lus10039102 [exp]	22.4	0.6622
AT2G35150		EXL7, EXL1	EXORDIUM LIKE 7, EXORDIUM like...		Lus10018314 [exp]	23.5	0.7171

Compare expression of checked genes

Lus10009405 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.