Plant FIBer expression Database

Lus10009406 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G44716 39 / 0.0002 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020554
[exp]
198 / 4e-66 AT3G44716 54 / 2e-09 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G148200
[exp]
52 / 1e-08 AT3G44716 65 / 4e-13 unknown protein
PFAM info
Representative CDS sequence
>Lus10009406 pacid=23142620 polypeptide=Lus10009406 locus=Lus10009406.g ID=Lus10009406.BGIv1.0 annot-version=v1.0
ATGATGAACAAAAACCTTATTCTTCTCCTCAATCTCCTCTTCCTCCTGCAACTCAATTCCATCTCCGCCGTCTCCATTCCGCCGCATTCGATTCTCCTCT
TCAACTGCTCCAATATTACATCATCAGTTCACACCACTCATCACTTAATCCAAAACTGCAGCACCAAGCTGGAAACCAGAGCCGGATCCAGTCCGTGTCT
GGTCGTAACCAATTCGGACAAGTTTTCCAAAATGGATTTTCGTCCGTTGGATCTACTGCGATGCTCTCATTACCTACTTCCTCCCCTGCATCGGAGGAGG
GTTTCGGTAGAGCTTCCTGATCGGGTTAAGAACTTGTGCGATCAATGTGGCGGCAACTGTGGAGCTGGGTTGAAGTGTCTTTGCCACCCGCAATAA
AA sequence
>Lus10009406 pacid=23142620 polypeptide=Lus10009406 locus=Lus10009406.g ID=Lus10009406.BGIv1.0 annot-version=v1.0
MMNKNLILLLNLLFLLQLNSISAVSIPPHSILLFNCSNITSSVHTTHHLIQNCSTKLETRAGSSPCLVVTNSDKFSKMDFRPLDLLRCSHYLLPPLHRRR
VSVELPDRVKNLCDQCGGNCGAGLKCLCHPQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G44716 unknown protein Lus10009406
[exp]
0 1
AT5G47760 ATPK5, ATPGLP2 2-phosphoglycolate phosphatase... Lus10033024
[exp]
1.4 0.8154
AT4G10120 ATSPS4F Sucrose-phosphate synthase fam... Lus10006186
[exp]
1.7 0.8306
AT5G12380 ANNAT8 annexin 8 (.1) Lus10010666
[exp]
2.4 0.7850
Lus10003607
[exp]
5.2 0.8118
AT3G49760 bZIP ATBZIP5 basic leucine-zipper 5 (.1) Lus10018662
[exp]
5.3 0.7901
AT1G49480 B3 REM19, RTV1 related to vernalization1 1 (.... Lus10009214
[exp]
8.8 0.7839
AT4G27590 Heavy metal transport/detoxifi... Lus10032924
[exp]
10.4 0.7777
AT5G02440 unknown protein Lus10000246
[exp]
10.6 0.7196
AT5G05830 RING/FYVE/PHD zinc finger supe... Lus10035549
[exp]
13.5 0.7518
AT5G17260 NAC ANAC086 NAC domain containing protein ... Lus10010371
[exp]
17.5 0.7608

Lus10009406 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.