Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023371 [exp] 87 / 2e-20 AT1G14220 76 / 1e-16 Ribonuclease T2 family protein (.1) Lus10015409 [exp] 49 / 6e-07 AT1G14220 79 / 8e-18 Ribonuclease T2 family protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009411 pacid=23142615 polypeptide=Lus10009411 locus=Lus10009411.g ID=Lus10009411.BGIv1.0 annot-version=v1.0 ATGCAACTTCTCTCATACGAGAGGCAACAAGGCAACTTCTCTTCTACGAGAGGAAAAAATATAACTTCTCTCCTACGTGAGGCAACAAAACAATCCGCCA CTACTTCTCATAACCCCCTCTCTCTGTTGATTCTCGACAATCATGCAACATGCTTTAACTACTACAAGCTGGCACTTCAGTGGCCAGCTGGTGTGTGCGA CCGTAGCAATTCGGAGAGACACTCATGCAATCTTGCCATTCCAAATACAGTGAAACTCCTTGGCCACCGGCCAAGTAATTGGCGGTTTGCTAATCCTCTA CCATCCTACGGCGTGTTATCTGGGGTGGATCTCGAGAACAAGATCACCCCCTTACCCTGTTCTCTACGCTGCCTTAAACAGGGATTGACCCCAACTATAC TCCGGCTTCTTGAATTGGCTAAACGAGTGGAAGGTCTGCGGCACACCACAGCACTGAAAGTACCAGCATACTGCCAAAAGGCCTTCGATTTTTACGCAAG CTACGACCCTCTGTTCCATCTTCAAGCAGGAGGCATTGTCCCCGACAACACAAGAGCATACAATGCCACTAAATTTCATCAAGCAGTAGGCGGTCGTCCT TCCCTCAAGGGTTATAAGAATCCCAACGCAAACAACTTTCAGGATTCCCTGCAACACCTTCACCTTAGGCAGCTGCGGATGACCGAATGGATGGTTCTAT AA
AA sequence Show only first row Show all	>Lus10009411 pacid=23142615 polypeptide=Lus10009411 locus=Lus10009411.g ID=Lus10009411.BGIv1.0 annot-version=v1.0 MQLLSYERQQGNFSSTRGKNITSLLREATKQSATTSHNPLSLLILDNHATCFNYYKLALQWPAGVCDRSNSERHSCNLAIPNTVKLLGHRPSNWRFANPL PSYGVLSGVDLENKITPLPCSLRCLKQGLTPTILRLLELAKRVEGLRHTTALKVPAYCQKAFDFYASYDPLFHLQAGGIVPDNTRAYNATKFHQAVGGRP SLKGYKNPNANNFQDSLQHLHLRQLRMTEWMVL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10009411 [exp]	0	1
					Lus10017959 [exp]	1.0	0.9988
AT5G52390			PAR1 protein (.1)		Lus10018204 [exp]	9.6	0.9398
AT1G29970		RPL18AA	60S ribosomal protein L18A-1 (...		Lus10026180 [exp]	12.8	0.9000
AT4G33860			Glycosyl hydrolase family 10 p...		Lus10033787 [exp]	15.1	0.8879
AT4G35220			Cyclase family protein (.1)		Lus10027872 [exp]	17.9	0.8771
AT2G26730			Leucine-rich repeat protein ki...		Lus10002360 [exp]	18.1	0.6671
AT2G02850		ARPN	plantacyanin (.1)		Lus10041848 [exp]	19.6	0.8364
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10027988 [exp]	19.6	0.8758
AT4G39670			Glycolipid transfer protein (G...		Lus10035024 [exp]	20.2	0.8430
					Lus10013255 [exp]	21.2	0.8758

Compare expression of checked genes

Lus10009411 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.