Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18010 151 / 2e-43 Major facilitator superfamily protein (.1) AT1G18000 151 / 2e-43 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019528 [exp] 167 / 1e-49 AT1G18010 659 / 0.0 Major facilitator superfamily protein (.1) Lus10043371 [exp] 167 / 2e-49 AT1G18010 657 / 0.0 Major facilitator superfamily protein (.1) Lus10006288 [exp] 165 / 2e-48 AT1G18010 649 / 0.0 Major facilitator superfamily protein (.1) Lus10020560 [exp] 164 / 2e-48 AT1G18010 573 / 0.0 Major facilitator superfamily protein (.1) Lus10019527 [exp] 159 / 1e-46 AT1G18010 578 / 0.0 Major facilitator superfamily protein (.1) Lus10009415 [exp] 44 / 2e-05 AT1G18010 108 / 1e-28 Major facilitator superfamily protein (.1) Lus10009416 [exp] 0 / 1 AT1G18010 405 / 1e-140 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G005100 [exp] 162 / 1e-47 AT1G18010 630 / 0.0 Major facilitator superfamily protein (.1) Potri.012G011000 [exp] 114 / 7e-30 AT1G18010 422 / 5e-146 Major facilitator superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009413 pacid=23142612 polypeptide=Lus10009413 locus=Lus10009413.g ID=Lus10009413.BGIv1.0 annot-version=v1.0 ATGAGCTTGGTAAACGGTACCGGCGGCCACCAGGAGTCACCTCCAGCCACCACCACATCGGCAGTAGTGGCGGTGGGATCAGACAATCCTCGTTGGAGGC ACAAAAGTACCCTCCTATCGATGGCCATACTTCCGGGAAATAGAGTAATCCGCAAAGACGGCACTCGATGCACTCCGACAAACCGCTTGAAACCCGCCAC GGAAGCAATGCAAGTCTTAAAACTCTTCACAAATTGGAAGATGCTACTAATGGCACCAGCAGCATGGTCAAGCAACTTCTTCTACACCTACCAATTCAAC AACGTCAACGCCACACAGTTCGAGACGAGGACACGCGTACTCAACAATGTGTCCTACTGGGGAGCTCAGATGCTGGGCTCCCTCGCTATTAGGCAAGTGT TCGACCGCGCTTTCAAAAGCCGTCGGAAACAAGTTTTTTCAGAGATTACCACTGTAGCTCTGGTCAGAACAGCCATTTGGGTGGCGGTATCGCCAACTAA ATGGGCTACTCGTTTGGCCGGATGCCGAGTCCGAAATTGGATATGGTGGAATTCCGGCCTAGGTTTATTGGGCCGTATGTTTTGTACTTTTGTTATGGGC TTTTGGATGCGTTCTTTCAATCTATGA
AA sequence Show only first row Show all	>Lus10009413 pacid=23142612 polypeptide=Lus10009413 locus=Lus10009413.g ID=Lus10009413.BGIv1.0 annot-version=v1.0 MSLVNGTGGHQESPPATTTSAVVAVGSDNPRWRHKSTLLSMAILPGNRVIRKDGTRCTPTNRLKPATEAMQVLKLFTNWKMLLMAPAAWSSNFFYTYQFN NVNATQFETRTRVLNNVSYWGAQMLGSLAIRQVFDRAFKSRRKQVFSEITTVALVRTAIWVAVSPTKWATRLAGCRVRNWIWWNSGLGLLGRMFCTFVMG FWMRSFNL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18010			Major facilitator superfamily ...		Lus10009413 [exp]	0	1
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10013919 [exp]	2.2	0.9762
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10013920 [exp]	3.2	0.9739
AT1G08580			unknown protein		Lus10000388 [exp]	3.7	0.8511
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10014126 [exp]	3.9	0.9739
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10015241 [exp]	4.5	0.9739
AT5G20260			Exostosin family protein (.1)		Lus10039980 [exp]	5.0	0.9739
AT5G14380		AGP6	arabinogalactan protein 6 (.1)		Lus10022309 [exp]	6.2	0.7471
AT3G14250			RING/U-box superfamily protein...		Lus10022064 [exp]	6.5	0.9326
AT1G26730			EXS (ERD1/XPR1/SYG1) family pr...		Lus10004284 [exp]	6.9	0.9383
AT5G57520	C2H2ZnF	ATZFP2, ZFP2	zinc finger protein 2 (.1)		Lus10006960 [exp]	7.5	0.7086

Compare expression of checked genes

Lus10009413 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.