Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27285 99 / 2e-24 Coiled-coil domain-containing protein 55 (DUF2040) (.1) AT2G27280 96 / 9e-23 Coiled-coil domain-containing protein 55 (DUF2040) (.1) AT1G55928 77 / 2e-16 Coiled-coil domain-containing protein 55 (DUF2040) (.1) AT1G05675 72 / 2e-14 UDP-Glycosyltransferase superfamily protein (.1) AT2G31750 70 / 8e-14 UGT74D1 UDP-glucosyl transferase 74D1 (.1) AT3G16520 66 / 2e-12 UGT88A1 UDP-glucosyl transferase 88A1 (.1.2.3) AT2G43820 64 / 1e-11 SGT1, ATSAGT1, GT, UGT74F2 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) AT1G78270 50 / 4e-07 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT5G05880 50 / 4e-07 UDP-Glycosyltransferase superfamily protein (.1) AT1G22340 50 / 6e-07 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038787 [exp] 168 / 5e-51 AT2G27285 225 / 6e-72 Coiled-coil domain-containing protein 55 (DUF2040) (.1) Lus10020557 [exp] 146 / 1e-42 AT2G27285 240 / 5e-78 Coiled-coil domain-containing protein 55 (DUF2040) (.1) Lus10039072 [exp] 142 / 9e-41 AT2G27285 224 / 3e-71 Coiled-coil domain-containing protein 55 (DUF2040) (.1) Lus10009412 [exp] 124 / 4e-33 AT2G43820 474 / 1e-165 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10020556 [exp] 121 / 4e-32 AT2G43820 472 / 1e-164 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10020559 [exp] 81 / 2e-17 AT2G43820 436 / 3e-150 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10024834 [exp] 76 / 1e-15 AT2G43820 290 / 7e-93 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10009409 [exp] 67 / 1e-14 AT2G31750 78 / 1e-18 UDP-glucosyl transferase 74D1 (.1) Lus10014148 [exp] 62 / 3e-11 AT2G43840 407 / 2e-139 UDP-glycosyltransferase 74 F1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G162500 [exp] 97 / 1e-23 AT2G27285 215 / 5e-68 Coiled-coil domain-containing protein 55 (DUF2040) (.1) Potri.007G117200 [exp] 77 / 5e-16 AT2G43840 461 / 1e-160 UDP-glycosyltransferase 74 F1 (.1.2) Potri.007G140500 [exp] 75 / 2e-15 AT2G43840 463 / 3e-161 UDP-glycosyltransferase 74 F1 (.1.2) Potri.004G201300 [exp] 67 / 4e-13 AT2G27285 105 / 2e-26 Coiled-coil domain-containing protein 55 (DUF2040) (.1) Potri.015G071900 [exp] 65 / 4e-12 AT1G24100 427 / 5e-147 UDP-glucosyl transferase 74B1 (.1) Potri.001G389200 [exp] 65 / 4e-12 AT1G05680 494 / 2e-173 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.017G032733 [exp] 64 / 8e-12 AT1G05680 444 / 6e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.017G032700 [exp] 64 / 8e-12 AT1G05680 444 / 6e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.014G175000 [exp] 63 / 2e-11 AT2G43840 411 / 8e-141 UDP-glycosyltransferase 74 F1 (.1.2) Potri.007G141900 [exp] 61 / 3e-11 AT1G05675 271 / 2e-89 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09745 [flax] [poplar] DUF2040 Coiled-coil domain-containing protein 55 (DUF2040)
Representative CDS sequence Show only first row Show all	>Lus10009414 pacid=23142618 polypeptide=Lus10009414 locus=Lus10009414.g ID=Lus10009414.BGIv1.0 annot-version=v1.0 ATGATGAAGAAGTACGGTTTACAGCTGAGAGTGCAGCCGTCCCAGCATAAAAAACCACCCAGGCCACCTCCTCCCAAGCCCCTAGGGTTCATGAACGATG GTGATGAAGATGAGGACAATGTCGAGCGAGACATTGCACGGCAAGCTACCAAGAACAAGTCTCTCAAGGATATCGAGGAGCAGCATAAGAAAGCGTTGGA GGAAGACCCATCGGTGTTTGATTATGATGGAGTATACGATGAGATGAAGCAGAAAATTGTTCGTCCACGGATTGAGGATAAGGAACAAAAAAAGTCAGTC TCCATATCATGGATTGCAACCAAGCCACCCAAATCGGTTATTAACGTTGCATTTGGAAGCATGGTCAGCTTCAACCGGACTCAAATGACCGAGCTAGCAT CAGACCTCAAGCGAATGAACAAATACATCATGTGGGTCATACGCGACACCGAGATGGCCAAGCTCCCGACTGATTTTGTCAGTTACTTGGGCGACAAGGC ACTGGTCGTGAAATTGGGCCCCGCAAATCCAGATCCTAACGAGCAAGGCGATGGGTTGTTTTTTCACGCATTGTGGTTGGAACTCGACAATAGAAGCATT GAGTCTGGGGATACCCATGGTGGCGATGCCACAGTGGTCCGACCAACCGCCGAATGCGATGCTTGTCAAGCAAGTTTGGAGAGTTGGGGTTAG
AA sequence Show only first row Show all	>Lus10009414 pacid=23142618 polypeptide=Lus10009414 locus=Lus10009414.g ID=Lus10009414.BGIv1.0 annot-version=v1.0 MMKKYGLQLRVQPSQHKKPPRPPPPKPLGFMNDGDEDEDNVERDIARQATKNKSLKDIEEQHKKALEEDPSVFDYDGVYDEMKQKIVRPRIEDKEQKKSV SISWIATKPPKSVINVAFGSMVSFNRTQMTELASDLKRMNKYIMWVIRDTEMAKLPTDFVSYLGDKALVVKLGPANPDPNEQGDGLFFHALWLELDNRSI ESGDTHGGDATVVRPTAECDACQASLESWG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27285			Coiled-coil domain-containing ...		Lus10009414 [exp]	0	1
					Lus10018953 [exp]	102.1	0.6998
AT3G16170		AAE13	acyl activating enzyme 13, AMP...		Lus10035861 [exp]	107.6	0.7065
AT4G26180			Mitochondrial substrate carrie...		Lus10008572 [exp]	200.6	0.6708

Compare expression of checked genes

Lus10009414 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.