Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18010 93 / 3e-23 Major facilitator superfamily protein (.1) AT1G18000 93 / 3e-23 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019528 [exp] 103 / 5e-27 AT1G18010 659 / 0.0 Major facilitator superfamily protein (.1) Lus10043371 [exp] 102 / 1e-26 AT1G18010 657 / 0.0 Major facilitator superfamily protein (.1) Lus10006288 [exp] 88 / 4e-21 AT1G18010 649 / 0.0 Major facilitator superfamily protein (.1) Lus10019527 [exp] 83 / 2e-19 AT1G18010 578 / 0.0 Major facilitator superfamily protein (.1) Lus10009413 [exp] 44 / 8e-06 AT1G18010 152 / 2e-47 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G005100 [exp] 96 / 3e-24 AT1G18010 630 / 0.0 Major facilitator superfamily protein (.1) Potri.012G011000 [exp] 72 / 1e-15 AT1G18010 422 / 5e-146 Major facilitator superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009415 pacid=23142628 polypeptide=Lus10009415 locus=Lus10009415.g ID=Lus10009415.BGIv1.0 annot-version=v1.0 ATGAACATGGAAAACGGCACCTGCACCGGCGGCCACCAGGAGTCGGCTCCTGCCGCCACCACCGTGGCGGTACCCGATAATTCTCGTTGGAGGCACAACT CGCCGTTGACCCAAGTCGTCCTAATCGGACTAGTATGCTTCTGTTGCCCGGGGATGTTTCGAGCACTCACCGGGCTGGGCGGCGGAGGACAGGTGGACCC CACCGCCGCCAACAAGGCCAATACAGCCGTGTACGCTACTTTTGCAGCGTTTAGCTTCGCCGGCGGGGGGCCGCGCACGCGGCGTGGGCCCAGGCACACT CCTCTACAATGTCCTGGGCCCACGCCTCATGCTCCCTGCAGGGTGTGTTACCTACGCGCTGTACGCGTGGTCTTTCCTCTACTATAA
AA sequence Show only first row Show all	>Lus10009415 pacid=23142628 polypeptide=Lus10009415 locus=Lus10009415.g ID=Lus10009415.BGIv1.0 annot-version=v1.0 MNMENGTCTGGHQESAPAATTVAVPDNSRWRHNSPLTQVVLIGLVCFCCPGMFRALTGLGGGGQVDPTAANKANTAVYATFAAFSFAGGGPRTRRGPRHT PLQCPGPTPHAPCRVCYLRAVRVVFPLL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18010			Major facilitator superfamily ...		Lus10009415 [exp]	0	1
AT2G29090		CYP707A2	"cytochrome P450, family 707, ...		Lus10016515 [exp]	15.2	0.7432
AT1G13890		ATSNAP30, SNAP3...	soluble N-ethylmaleimide-sensi...		Lus10036893 [exp]	20.5	0.6631
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10026623 [exp]	42.0	0.6722
AT3G02230		ATRGP1, RGP1	ARABIDOPSIS THALIANA REVERSIBL...		Lus10034376 [exp]	49.0	0.6579
AT1G52560			HSP20-like chaperones superfam...		Lus10023653 [exp]	54.9	0.6678
AT3G02125			unknown protein		Lus10013196 [exp]	61.6	0.6592
AT3G07610		IBM1	increase in bonsai methylation...		Lus10004549 [exp]	71.1	0.6521
					Lus10005955 [exp]	81.2	0.6442
AT1G71120		GLIP6	GDSL-motif lipase/hydrolase 6 ...		Lus10034635 [exp]	91.8	0.6425
AT2G40340	AP2_ERF	AtERF48, DREB2C	Integrase-type DNA-binding sup...		Lus10023633 [exp]	92.9	0.6214

Compare expression of checked genes

Lus10009415 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.