Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18010 391 / 3e-135 Major facilitator superfamily protein (.1) AT1G18000 391 / 3e-135 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020560 [exp] 422 / 3e-147 AT1G18010 573 / 0.0 Major facilitator superfamily protein (.1) Lus10019527 [exp] 422 / 3e-147 AT1G18010 578 / 0.0 Major facilitator superfamily protein (.1) Lus10019528 [exp] 422 / 7e-147 AT1G18010 659 / 0.0 Major facilitator superfamily protein (.1) Lus10006288 [exp] 420 / 5e-146 AT1G18010 649 / 0.0 Major facilitator superfamily protein (.1) Lus10043371 [exp] 418 / 2e-145 AT1G18010 657 / 0.0 Major facilitator superfamily protein (.1) Lus10043370 [exp] 98 / 2e-24 AT1G18010 103 / 3e-26 Major facilitator superfamily protein (.1) Lus10009413 [exp] 0 / 1 AT1G18010 152 / 2e-47 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G005100 [exp] 417 / 3e-145 AT1G18010 630 / 0.0 Major facilitator superfamily protein (.1) Potri.012G011000 [exp] 300 / 3e-100 AT1G18010 422 / 5e-146 Major facilitator superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009416 pacid=23142623 polypeptide=Lus10009416 locus=Lus10009416.g ID=Lus10009416.BGIv1.0 annot-version=v1.0 ATGACTTCTTACCCACCGGCGGAGAAGAAGGGAAGTTATATTTCGATGGTTTGGGTTATATTTAGCTCCGGCGGGGTGGTCGGTGGGCTTGTGCCGTTCT TGTTGAATTTCCACGCCGGGGAAGTGGATGCTGCTGTTAATGATGCGACGTACATTGCTTTCATTGCCTTCATGGCTGCAGGTACCCTCCTATCGATGGC CATACTTCCGGGAAATCAAGTAATCCGCAAAGACGGCACTCGATGCACTCGGACAAACCACTCGAACCCCGCCACGGAGGCAATGCAAGTCCTAAAACTC TTCACAAATTGGAAGATGCTACTAATGGCGCCTGCAGCCTGGGCAAGCAACTTCTTCTACACCTACCAATTCAATAACGTCAACGCGGCGCAGTTCGACA CTAGGACGCGCGGACTTAACAACGTGTTGTACTGGGCAGCCCAGATGATGGGCTCCCCGATGATCGGTCTAGTGTTCGACCGCGCTTTCAAAAGTCGGCG AAAACGAGGCTTTGCAGGGATCGCTACTGTAGCTTTGGTCGGAACCGCCATTTGGGGCGGCGGCTTTGCCAACCAGATTGGTTACTCGTTCGGCCGGATG CCGAGTCCGAAATTGGATATGGTGGAATCTGGGGCTAGATTTATTGGGCCGTTTGTTTTATACATTTGTTATGGGTTTTTGGATGCGTTTTTTCAGACTA TGATTTATTGGGTTATTGGCGCGTTGGCTGATGATTCGGAAGTTCTGAGTAGGTACGTAGGATTCTACAAAGGGGTGCAGAGTGTTGGAGCTGCGGTGGC TTGGCAGCTCGATTCGAGTAAAGTTCCAATGATGGTTCAACTGGTTCTGAATTGGGGGTTTGCTACGGTTAGTTATCCTTTGCTTGTGGTGTTGGTAGCT TTCGCTGTCATGGATGATGATGATGATGGAAAAGAAGCTTTCGATCCTACCCCATGA
AA sequence Show only first row Show all	>Lus10009416 pacid=23142623 polypeptide=Lus10009416 locus=Lus10009416.g ID=Lus10009416.BGIv1.0 annot-version=v1.0 MTSYPPAEKKGSYISMVWVIFSSGGVVGGLVPFLLNFHAGEVDAAVNDATYIAFIAFMAAGTLLSMAILPGNQVIRKDGTRCTRTNHSNPATEAMQVLKL FTNWKMLLMAPAAWASNFFYTYQFNNVNAAQFDTRTRGLNNVLYWAAQMMGSPMIGLVFDRAFKSRRKRGFAGIATVALVGTAIWGGGFANQIGYSFGRM PSPKLDMVESGARFIGPFVLYICYGFLDAFFQTMIYWVIGALADDSEVLSRYVGFYKGVQSVGAAVAWQLDSSKVPMMVQLVLNWGFATVSYPLLVVLVA FAVMDDDDDGKEAFDPTP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18010			Major facilitator superfamily ...		Lus10009416 [exp]	0	1
AT5G52410			unknown protein		Lus10026416 [exp]	4.0	0.8282
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10002535 [exp]	13.6	0.7700
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10041667 [exp]	16.4	0.8041
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10018983 [exp]	22.8	0.7490
AT5G53110			RING/U-box superfamily protein...		Lus10012628 [exp]	55.2	0.7946
AT5G05340			Peroxidase superfamily protein...		Lus10000346 [exp]	58.2	0.7754
AT3G13840	GRAS		GRAS family transcription fact...		Lus10000531 [exp]	67.0	0.7477
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Lus10027567 [exp]	80.9	0.7497
AT2G30150			UDP-Glycosyltransferase superf...		Lus10042262 [exp]	87.9	0.7672
AT1G10810			NAD(P)-linked oxidoreductase s...		Lus10010566 [exp]	154.8	0.7347

Compare expression of checked genes

Lus10009416 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.