Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34550 709 / 0 EMB2756 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) AT4G09630 601 / 0 Protein of unknown function (DUF616) (.1) AT2G02910 473 / 7e-162 Protein of unknown function (DUF616) (.1) AT1G53040 268 / 2e-81 Protein of unknown function (DUF616) (.1), Protein of unknown function (DUF616) (.2) AT1G28240 265 / 9e-80 Protein of unknown function (DUF616) (.1) AT5G42660 232 / 6e-69 Protein of unknown function (DUF616) (.1) AT4G38500 228 / 5e-67 Protein of unknown function (DUF616) (.1) AT5G46220 139 / 3e-35 Protein of unknown function (DUF616) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028702 [exp] 1211 / 0 AT1G34550 750 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Lus10036741 [exp] 462 / 3e-157 AT2G02910 545 / 0.0 Protein of unknown function (DUF616) (.1) Lus10037186 [exp] 461 / 5e-155 AT2G02910 546 / 0.0 Protein of unknown function (DUF616) (.1) Lus10001446 [exp] 264 / 2e-79 AT1G28240 706 / 0.0 Protein of unknown function (DUF616) (.1) Lus10011175 [exp] 257 / 7e-77 AT1G28240 730 / 0.0 Protein of unknown function (DUF616) (.1) Lus10015438 [exp] 243 / 1e-71 AT1G28240 698 / 0.0 Protein of unknown function (DUF616) (.1) Lus10025082 [exp] 239 / 4e-71 AT4G38500 764 / 0.0 Protein of unknown function (DUF616) (.1) Lus10024001 [exp] 237 / 2e-70 AT4G38500 771 / 0.0 Protein of unknown function (DUF616) (.1) Lus10016294 [exp] 223 / 4e-65 AT5G42660 603 / 0.0 Protein of unknown function (DUF616) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G084100 [exp] 775 / 0 AT1G34550 707 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Potri.013G113700 [exp] 773 / 0 AT1G34550 708 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Potri.010G094000 [exp] 517 / 4e-179 AT2G02910 565 / 0.0 Protein of unknown function (DUF616) (.1) Potri.011G053000 [exp] 261 / 1e-78 AT1G28240 775 / 0.0 Protein of unknown function (DUF616) (.1) Potri.011G119300 [exp] 260 / 1e-78 AT1G53040 588 / 0.0 Protein of unknown function (DUF616) (.1), Protein of unknown function (DUF616) (.2) Potri.004G044100 [exp] 260 / 6e-78 AT1G28240 779 / 0.0 Protein of unknown function (DUF616) (.1) Potri.001G399800 [exp] 255 / 9e-77 AT1G53040 574 / 0.0 Protein of unknown function (DUF616) (.1), Protein of unknown function (DUF616) (.2) Potri.009G138000 [exp] 236 / 8e-70 AT4G38500 725 / 0.0 Protein of unknown function (DUF616) (.1) Potri.004G177600 [exp] 234 / 5e-69 AT4G38500 750 / 0.0 Protein of unknown function (DUF616) (.1) Potri.002G149900 [exp] 230 / 7e-68 AT5G42660 633 / 0.0 Protein of unknown function (DUF616) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04765 [flax] [poplar] DUF616 Protein of unknown function (DUF616)
Representative CDS sequence Show only first row Show all	>Lus10009419 pacid=23149715 polypeptide=Lus10009419 locus=Lus10009419.g ID=Lus10009419.BGIv1.0 annot-version=v1.0 ATGGCTCAGTACAGGCAATCGGGTCAGCAGCACTTCCCCAACGGCTCGGATCACGTATCGGTCGGTGTCCGGGCGTCGTCTTCACAGCAGCACCTCCAGC ACAAGTCGGGGCGGGCCCGTCGATCTGGGCGATCCGATAAGGGACGGTTCGGGAGCTTCTCCATTGGCGCAGTGGTGATTTTCCTTTGTGCTGTGCTTGT GGTCACTGTGTTAGCTTACAATTACTTGTCTGCTGAGGAAAAAGGTATTGATGATCCTAGAGTTGAGGACGATGACTCAAAGAGTGATCTTGATTTCCTT ACGAATGTCACTCGGACCGACTCGGTGAAAGTCCTTGAATTTGGTCAAGGCTCTGTAGATCATGCCAAAGATTCTAGATATTGGGATAGGGATGATAGGA GGAGGGATAACGATTATGACGAGGATGACGTGGAGCATAATAGCGAGGATTTTACTGGCGGATCTGGTCATGAACAGCACGATAAGGGAAATGTGAAGGA CAATCAGAAAACTTTGCATAGTGGTGTTGAGTCTAAAGGATTAGATCAAAGGGGAGTTGGGATGTACAATGAGAACGGGCGTAAAGAGCTGAAGAAGTAT GAAGCGGAGTATGTGGCTTCCTTAAAGAATCAAGGGCAATCGATGGAAGATGAGGAGCTGGAAGAGCCTGCTGATGGTGAGAATGAATATGATGATGCTA TAGATTCTCATGATGCTCGGCACTTGGGTGAAGATACCAAAGATTCTTCTGGTAAAAGTAAGGATCAGCCTACCGGGAAAGATATTAGGGGAGCTTCTCT GAGTTCATCTCATAAGGGTTTGAGTTCGAACTCAAACACTAATCCAAGTGCTGAACATGCAAATGGGAATGGTCATGGGTCAAGTAAATCAAAGTCCGAG TCAAAGAAAAAACCTAGGCGGCGCAAATTTTCTGGCTCCTGTGAGATGAAGTTTCTGAACTCCACAAAACTCGTGGAGCCTATCGACAATAGGAAGTTTT CAAGATTCGCCCTGCAGTATACCGACAGAGAAGAAAGACCTGCAGAAGACGAAACATGGGAACCTAGATTCGCAGGGCATCAGAGCCTAGAAGAGCGAGA GGATTCATTCTCAGCACGTGATCAGAAAATAAAATGTGGCTTTGTCAAAGGTCCTGAAGGCTATCCTAGTACAGGATTTGATTTATCAGAAGATGATACT AACTATATCAGTAGATGCCACATTGCCGTCATCTCTTGCATCTTTGGAAATTCTGATCACCTTAGGTCACCTTTCAGCAAAGCGGTCACTCGTTTATCGA GGAAAAATGTTTGCTTTGTTATGTTCATGGATGAAACTACATTACAAACCCTAACATCAGAGGGCCATATGCCAGATAGGGAAGGATTTATCGGTTTGTG GAAGATCGTGGTGGTGAAGAATCTACCTTATGACGATATGCGGAGAGTTGGTAAAATACCAAAATTGCTGCCACACAGACTGTTCCCTTCTGCAAGATAT TCAATGTGGCTGGATAGCAAGTTACGGCTTCAACTCGATCCTCAAATGGTCCTGGAGTATCTCCTGTGGAGAAAAGGTCACGAGTATGCCATTTCCAATC ACTACGATCGCCATTGCGTATGGGAAGAGGTTGCGCAGAATAAACGGCTCAACAAATACAATCATACAATAATAGACGAGCAATTCGCCTTCTACCAAGC CGATGGTCTAACAAAATTCGATCCCTCTGATCCAAACAAGCTTCTTCCCAGCAATGTACCGGAAGGATCATTGATTGTTCGAGCACACACTCCGATGTCG AACCTATTCTCGTGTCTATGGTTCAACGAGGTGGAACGCTTCACTCCCCGAGACCAGCTGAGTTTTGCCTATACATACCAGAAGTTGAGAAGGATGAATC CCAGCAAACCATTTAACTTCCATATGTTCAAGGATTGTGAAAGGAGAGCCATAGCCAAGCTGTTCCGTCACCGTACCGAGGAGAAGCGACTCATGCACGA AGCAACGAGATGA
AA sequence Show only first row Show all	>Lus10009419 pacid=23149715 polypeptide=Lus10009419 locus=Lus10009419.g ID=Lus10009419.BGIv1.0 annot-version=v1.0 MAQYRQSGQQHFPNGSDHVSVGVRASSSQQHLQHKSGRARRSGRSDKGRFGSFSIGAVVIFLCAVLVVTVLAYNYLSAEEKGIDDPRVEDDDSKSDLDFL TNVTRTDSVKVLEFGQGSVDHAKDSRYWDRDDRRRDNDYDEDDVEHNSEDFTGGSGHEQHDKGNVKDNQKTLHSGVESKGLDQRGVGMYNENGRKELKKY EAEYVASLKNQGQSMEDEELEEPADGENEYDDAIDSHDARHLGEDTKDSSGKSKDQPTGKDIRGASLSSSHKGLSSNSNTNPSAEHANGNGHGSSKSKSE SKKKPRRRKFSGSCEMKFLNSTKLVEPIDNRKFSRFALQYTDREERPAEDETWEPRFAGHQSLEEREDSFSARDQKIKCGFVKGPEGYPSTGFDLSEDDT NYISRCHIAVISCIFGNSDHLRSPFSKAVTRLSRKNVCFVMFMDETTLQTLTSEGHMPDREGFIGLWKIVVVKNLPYDDMRRVGKIPKLLPHRLFPSARY SMWLDSKLRLQLDPQMVLEYLLWRKGHEYAISNHYDRHCVWEEVAQNKRLNKYNHTIIDEQFAFYQADGLTKFDPSDPNKLLPSNVPEGSLIVRAHTPMS NLFSCLWFNEVERFTPRDQLSFAYTYQKLRRMNPSKPFNFHMFKDCERRAIAKLFRHRTEEKRLMHEATR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34550		EMB2756	EMBRYO DEFECTIVE 2756, Protein...		Lus10009419 [exp]	0	1
AT2G46710			Rho GTPase activating protein ...		Lus10030213 [exp]	1.4	0.8576
AT5G52430			hydroxyproline-rich glycoprote...		Lus10039253 [exp]	2.2	0.8017
AT4G37590		MEL1, NPY5	NAKED PINS IN YUC MUTANTS 5, M...		Lus10019297 [exp]	3.3	0.7682
AT3G18060			transducin family protein / WD...		Lus10027252 [exp]	4.9	0.8053
AT1G12840		ATVHA-C, DET3	DE-ETIOLATED 3, ARABIDOPSIS TH...		Lus10035159 [exp]	6.5	0.8135
AT5G65430		14-3-3KAPPA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10014899 [exp]	6.9	0.7653
AT2G31680		AtRABA5d	RAB GTPase homolog A5D (.1)		Lus10026731 [exp]	8.7	0.8020
AT3G59350			Protein kinase superfamily pro...		Lus10025496 [exp]	13.3	0.7742
AT1G23750			Nucleic acid-binding, OB-fold-...		Lus10030871 [exp]	14.2	0.7746
AT5G15880			unknown protein		Lus10034091 [exp]	15.0	0.7466

Compare expression of checked genes

Lus10009419 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.