Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09620 215 / 4e-71 Mitochondrial transcription termination factor family protein (.1) AT2G44020 46 / 7e-06 Mitochondrial transcription termination factor family protein (.1) AT4G02990 43 / 8e-05 RUG2, BSM RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028701 [exp] 391 / 9e-141 AT4G09620 226 / 1e-75 Mitochondrial transcription termination factor family protein (.1) Lus10004614 [exp] 48 / 2e-06 AT2G44020 707 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10022321 [exp] 45 / 3e-05 AT4G02990 540 / 0.0 RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) Lus10014877 [exp] 44 / 3e-05 AT4G02990 665 / 0.0 RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) Lus10004534 [exp] 43 / 6e-05 AT2G44020 477 / 7e-168 Mitochondrial transcription termination factor family protein (.1) Lus10029422 [exp] 42 / 0.0001 AT2G36000 294 / 3e-98 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Lus10004219 [exp] 42 / 0.0002 AT2G36000 293 / 8e-98 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Lus10042322 [exp] 41 / 0.0005 AT2G21710 720 / 0.0 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G113500 [exp] 253 / 3e-86 AT4G09620 244 / 1e-82 Mitochondrial transcription termination factor family protein (.1) Potri.013G116700 [exp] 50 / 5e-07 AT2G44020 764 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.014G137400 [exp] 49 / 1e-06 AT4G02990 669 / 0.0 RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) Potri.009G116200 [exp] 43 / 8e-05 AT2G21710 748 / 0.0 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) Potri.004G209400 [exp] 40 / 0.0006 AT4G38160 481 / 3e-172 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [flax] [poplar] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Lus10009420 pacid=23149723 polypeptide=Lus10009420 locus=Lus10009420.g ID=Lus10009420.BGIv1.0 annot-version=v1.0 ATGGTGGCAGGGATGGTAGGAAGAGCATTGGCTGCAGCACCTCTGCTAACATTCAATTCCAGAACTCGTTCGAGCTTTCTCGATCACGAAATTCAAACAA CTACACCTCTCGTTCTAAGACCGAACCGGAATCATCCCAACAGATGGGCGGTAGATTCGACTGCAAAGTCCGAAGCTTTACCCTTTACCGACCAAGATCA GACAACATGGGACTCGTGCAGAGATGTCCTGTCAGCATTCGACTTCGACACCAACGAGAAGGACAAGATGTTGGGGAAAGCATTCGGCCACGTAGCATCC TCCTATTGGGGCGAAGACCGGAAGCAAGAAGTCCCTACATACGACATCGTTAAAGGGATCGTGGACTACCTGAAACAGCTTGGCTTGACCGACGAGGATC TGGTCAAGGTGCTGAAGAAGTTTCCGGAAGTCATGGGGTGTAGCCTCGAAGAGGATCTGAAGAAGAACGTTGGGATTCTCGAAAAGGAGTGGGGGATCAA AGGGAAGACTCTGAGAAGCTTGCTGCTTCGGAATCCGAAGGTTTTGGGGTTCAATGTCGATTGCAAGGGCGATTGTATGGCGCAATGCACTCGCTGCTGG GTTCGTTTCTGA
AA sequence Show only first row Show all	>Lus10009420 pacid=23149723 polypeptide=Lus10009420 locus=Lus10009420.g ID=Lus10009420.BGIv1.0 annot-version=v1.0 MVAGMVGRALAAAPLLTFNSRTRSSFLDHEIQTTTPLVLRPNRNHPNRWAVDSTAKSEALPFTDQDQTTWDSCRDVLSAFDFDTNEKDKMLGKAFGHVAS SYWGEDRKQEVPTYDIVKGIVDYLKQLGLTDEDLVKVLKKFPEVMGCSLEEDLKKNVGILEKEWGIKGKTLRSLLLRNPKVLGFNVDCKGDCMAQCTRCW VRF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09620			Mitochondrial transcription te...		Lus10009420 [exp]	0	1
AT1G29530			unknown protein		Lus10015254 [exp]	1.4	0.8618
AT5G24460			unknown protein		Lus10032931 [exp]	2.0	0.8540
AT3G16190			Isochorismatase family protein...		Lus10006833 [exp]	3.0	0.8465
AT3G25530		GR1, GLYR1, GHB...	glyoxylate reductase 1 (.1.2)		Lus10012301 [exp]	5.3	0.8195
AT3G12350			F-box family protein (.1.2)		Lus10010607 [exp]	5.5	0.8035
AT4G23330			unknown protein		Lus10032266 [exp]	6.9	0.7998
AT1G64850			Calcium-binding EF hand family...		Lus10013613 [exp]	8.5	0.8102
AT1G10500		ATCPISCA	chloroplast-localized ISCA-lik...		Lus10012683 [exp]	11.0	0.8122
AT1G76570			Chlorophyll A-B binding family...		Lus10005421 [exp]	12.2	0.7779
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Lus10042470 [exp]	12.2	0.8208

Compare expression of checked genes

Lus10009420 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.