Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22690 90 / 2e-23 Gibberellin-regulated family protein (.1.2.3) AT4G09600 87 / 1e-22 GASA3 GAST1 protein homolog 3 (.1) AT1G75750 80 / 7e-20 GASA1 GAST1 protein homolog 1 (.1.2) AT2G18420 80 / 8e-20 Gibberellin-regulated family protein (.1) AT5G14920 81 / 2e-18 Gibberellin-regulated family protein (.1.2) AT4G09610 70 / 7e-16 GASA2 GAST1 protein homolog 2 (.1) AT2G39540 67 / 8e-15 Gibberellin-regulated family protein (.1) AT1G74670 66 / 2e-14 GASA6 GA-stimulated Arabidopsis 6, Gibberellin-regulated family protein (.1) AT5G59845 63 / 2e-13 Gibberellin-regulated family protein (.1) AT1G10588 63 / 3e-13 Gibberellin-regulated family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034524 [exp] 86 / 4e-22 AT1G75750 94 / 3e-26 GAST1 protein homolog 1 (.1.2) Lus10017212 [exp] 83 / 4e-21 AT1G75750 107 / 3e-32 GAST1 protein homolog 1 (.1.2) Lus10033145 [exp] 78 / 4e-19 AT1G75750 81 / 2e-21 GAST1 protein homolog 1 (.1.2) Lus10014262 [exp] 72 / 2e-16 AT4G09600 86 / 7e-23 GAST1 protein homolog 3 (.1) Lus10039443 [exp] 72 / 5e-16 AT5G14920 103 / 2e-27 Gibberellin-regulated family protein (.1.2) Lus10025962 [exp] 69 / 3e-15 AT4G09600 87 / 1e-23 GAST1 protein homolog 3 (.1) Lus10018016 [exp] 69 / 4e-15 AT1G74670 110 / 2e-32 GA-stimulated Arabidopsis 6, Gibberellin-regulated family protein (.1) Lus10024338 [exp] 67 / 1e-14 ND 78 / 3e-20 Lus10004048 [exp] 65 / 6e-14 AT1G74670 109 / 1e-32 GA-stimulated Arabidopsis 6, Gibberellin-regulated family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G083900 [exp] 100 / 2e-27 AT1G22690 103 / 1e-29 Gibberellin-regulated family protein (.1.2.3) Potri.002G022500 [exp] 91 / 8e-24 AT2G18420 99 / 2e-28 Gibberellin-regulated family protein (.1) Potri.005G239100 [exp] 87 / 2e-22 AT1G75750 112 / 1e-33 GAST1 protein homolog 1 (.1.2) Potri.002G022600 [exp] 86 / 6e-22 AT1G75750 110 / 4e-33 GAST1 protein homolog 1 (.1.2) Potri.005G239000 [exp] 84 / 2e-21 AT2G18420 117 / 6e-36 Gibberellin-regulated family protein (.1) Potri.013G113400 [exp] 84 / 2e-21 AT2G18420 96 / 2e-27 Gibberellin-regulated family protein (.1) Potri.012G076700 [exp] 77 / 8e-19 AT2G18420 85 / 9e-23 Gibberellin-regulated family protein (.1) Potri.015G071500 [exp] 76 / 3e-18 AT5G14920 90 / 5e-23 Gibberellin-regulated family protein (.1.2) Potri.002G022700 [exp] 75 / 6e-18 AT1G75750 94 / 1e-26 GAST1 protein homolog 1 (.1.2) Potri.001G315500 [exp] 70 / 5e-16 AT2G30810 91 / 5e-25 Gibberellin-regulated family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02704 [flax] [poplar] GASA Gibberellin regulated protein
Representative CDS sequence Show only first row Show all	>Lus10009421 pacid=23149743 polypeptide=Lus10009421 locus=Lus10009421.g ID=Lus10009421.BGIv1.0 annot-version=v1.0 ATGGAGAAATGGCTCTATTTATACATGGCCCCTCCTATGGTGTCACATGTACTTCAATCATCTAAAAACCTTCTTATCACCATTTTCTCTGCAGAAAAGA TGAAGCTTTTTCTGTTTATTCTTATCTCTCTTATCCTCTGCTTTCTCCAAGCATCTCAAGTCCAGCCATCTGAAGCACTGGAGCATTCAGTTCCAAGGAG CATTGATGCAGCATCATCCTCCGTTGCTGATGAAACCAGCTCCATTGACAAGAAACATCATCAGCACCATCATGTGCATACCAAGAAAGTCATGATCAGT AAGTTTGTGTTCTCCATTGTACCAGAGTACGATGTTTCCGGAATCATTGATGGTTTCTTAATACTAGATTGCGGGATGGAGTGCAAGAGGAGGTGCAAGG AATCGTCGAGGAAAAACGTGTGCAATCGAGCTTGCAGGACATGCTGCCAGAGGTGCCATTGTGTTCCACCTGGTACTTATGGCCACAAGAGCTCTTGCCC TTGTTATGCCAGGCTCAAGACTCATGGCGGCCAGCTCAAATGCCCGTAA
AA sequence Show only first row Show all	>Lus10009421 pacid=23149743 polypeptide=Lus10009421 locus=Lus10009421.g ID=Lus10009421.BGIv1.0 annot-version=v1.0 MEKWLYLYMAPPMVSHVLQSSKNLLITIFSAEKMKLFLFILISLILCFLQASQVQPSEALEHSVPRSIDAASSSVADETSSIDKKHHQHHHVHTKKVMIS KFVFSIVPEYDVSGIIDGFLILDCGMECKRRCKESSRKNVCNRACRTCCQRCHCVPPGTYGHKSSCPCYARLKTHGGQLKCP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22690			Gibberellin-regulated family p...		Lus10009421 [exp]	0	1
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10003717 [exp]	1.0	0.9866
AT1G26945	bHLH	KDR, PRE6	KIDARI, basic helix-loop-helix...		Lus10036732 [exp]	1.4	0.9800
AT3G59090			unknown protein		Lus10040880 [exp]	2.2	0.9739
AT4G12690			Plant protein of unknown funct...		Lus10006223 [exp]	2.4	0.9767
AT2G15580			RING/U-box superfamily protein...		Lus10030120 [exp]	3.3	0.9672
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10011997 [exp]	4.5	0.9756
					Lus10004293 [exp]	5.3	0.9656
AT2G18300	bHLH	bHLH064, HBI1	basic helix-loop-helix (bHLH) ...		Lus10026008 [exp]	6.7	0.9680
AT2G37640		ATHEXPALPHA1.9,...	ARABIDOPSIS THALIANA EXPANSIN ...		Lus10010841 [exp]	6.8	0.9600
AT4G12690			Plant protein of unknown funct...		Lus10036872 [exp]	9.0	0.9584

Compare expression of checked genes

Lus10009421 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.