Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06740 432 / 9e-142 Concanavalin A-like lectin protein kinase family protein (.1) AT1G70110 332 / 4e-103 Concanavalin A-like lectin protein kinase family protein (.1) AT4G04960 332 / 5e-103 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 325 / 1e-100 Concanavalin A-like lectin protein kinase family protein (.1) AT5G10530 322 / 6e-100 Concanavalin A-like lectin protein kinase family protein (.1) AT5G59260 318 / 6e-98 Concanavalin A-like lectin protein kinase family protein (.1) AT3G59700 314 / 1e-96 LECRK1, ATHLECRK LECTIN-RECEPTOR KINASE 1, lectin-receptor kinase (.1) AT3G53380 313 / 6e-96 Concanavalin A-like lectin protein kinase family protein (.1) AT5G65600 309 / 1e-94 Concanavalin A-like lectin protein kinase family protein (.1) AT3G59740 301 / 1e-91 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028699 [exp] 1252 / 0 AT5G06740 455 / 1e-151 Concanavalin A-like lectin protein kinase family protein (.1) Lus10021060 [exp] 398 / 2e-129 AT5G06740 667 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004166 [exp] 388 / 6e-125 AT5G06740 682 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016257 [exp] 382 / 5e-122 AT5G06740 638 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004279 [exp] 360 / 1e-113 AT5G10530 578 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040774 [exp] 355 / 1e-111 AT3G53810 713 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016507 [exp] 351 / 2e-110 AT3G53810 705 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020446 [exp] 350 / 2e-109 AT5G10530 516 / 2e-175 Concanavalin A-like lectin protein kinase family protein (.1) Lus10022662 [exp] 337 / 8e-105 AT5G01550 651 / 0.0 lectin receptor kinase a4.1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G455500 [exp] 850 / 0 AT5G06740 416 / 1e-136 Concanavalin A-like lectin protein kinase family protein (.1) Potri.011G146500 [exp] 824 / 0 AT5G06740 411 / 5e-135 Concanavalin A-like lectin protein kinase family protein (.1) Potri.004G209300 [exp] 596 / 0 AT5G06740 368 / 3e-118 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G193000 [exp] 439 / 2e-144 AT5G06740 688 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.016G045000 [exp] 434 / 1e-142 AT5G06740 702 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088680 [exp] 372 / 2e-118 AT2G37710 787 / 0.0 receptor lectin kinase (.1) Potri.006G088600 [exp] 367 / 1e-116 AT2G37710 808 / 0.0 receptor lectin kinase (.1) Potri.001G368300 [exp] 363 / 2e-115 AT5G55830 853 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088400 [exp] 360 / 7e-114 AT2G37710 800 / 0.0 receptor lectin kinase (.1) Potri.003G196600 [exp] 358 / 3e-113 AT4G29050 663 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10009423 pacid=23149719 polypeptide=Lus10009423 locus=Lus10009423.g ID=Lus10009423.BGIv1.0 annot-version=v1.0 ATGGCCGGTTCTAACCCCCCTTGCTACTCTCAGAATGGGTTACATTTATCTAATCCACCCAAACACTTTCCCTCCCTTCTTCCTCCATTTCCCCCACTCT CTTCCCAGCCGCCGGTTAATGGATCTCCGCCAGCGGCGCCGCCCGCGTACTCCTCACTCCGCCACCGCCGCCGCAGTCAAATTCTTCACTTCCTCCTCCT AATCCTCGCCGGCGCTTCCTCAATCTCACTCACCACATCTCAACAACAACCGCAAATAATCACCGAAAACCGCCGACTCGGCTCACCATTCACTCCCGCT GACTACTCAACCCTCGCCGTCGTTGATCCCGCTACAATCAGCAACGGCGCACTCCAAGTCACCCCTGACTCCGCCGGCAACTTCACTCTATCCAACCGCT CCGGTCGCATCCTATTCAATCAGACATACAAGCTTTGGGACGAAGACGATGGCAGCGCCGGTGCCGGCGCCGGTCACCGGACGGCTTCATTCAACACCTC TTTTCTTATCAACATCTTTCGTCTCACGAACGCATCTCTCCCCGGCGAAGGACTAGCTTTCCTAATCGCACCCGATTTGGAGCTGCCCGCGGGCAGCTCC GGACAGTATTTGGGGCTGACCAATCGCGAATCTGACGGAAACAGTTCGAATCAAATCCTGGCCGTTGAGCTCGACACTTTCAAGCAGGACTTCGATCCTG ATGCCAACCACTTAGGGTTGGACGTCCACAGCGTGCGGTCTTTGAAAACCGCATCATTGAGGGACCACGGGATCCAGCTGGCTCCTGCCGTCACCAGGTT CTACCTGGTCTGGATCCAGTATGATGGCCGGCGGAAGAGAATCGAGGTTTACATGGCAGAGAACGGCACCGCCAAGCCTGAAACCCCGATCCTCGAGGCC GACGATCTAGATCTGAAAGGAATTGTGAATCAGTACTCGTATTTTGGATTCGCGGCCTCCACGGGGAACAATACCCAACTCAACTGTGTGTTGAGCTGGA ATCTCACCGTGGAGCTCCTCGATCCAGAGGAAGTCGGAGCTGTTGCCGGCGACGACAGCTCCGGCTCCGGAGTCAAGATCGGAGTAGGAATTGGAGTATC AGCGTTCGTGCTAATTCTCGGAGGATCAATGGCAGCAGGGTGGTGGTGGTGGAGGAGGAAGAAGGCGGCGGAGGCGAATCCGAAGCTGACTGGAGCTCTC AAGAGCCTACCCGGGATGCCTAGGGAGTTTGATTTCAAGGATTTGAAGAAGGCGACGAATAATTTCGACGAGAAGCTGAAGCTAGGTCAAGGAGGATTCG GTATGGTGTACAAAGGAGTGTTGCCCGAGGACCATGTTCCTGTGGCGGTGAAGAAGTTCTCGAGGGAGAATTTGAAAGGGCAGGACGATTTCTTGTCGGA ACTAACAATCATCAACCGTCTCCGGCATAAGCACCTCGTCCGGCTACTCGGATGGTGTCACAAGAACGGCACCCTTCTCTTGGTCTACGACTACATGCCA AACGGAAGCTTGGACAATCACCTTTTCAACAACGGGTTCGAGGACGACACCAAAAACCCGACCCCATTACAATGGAAGCTCCGTTACAAGATCGTAACAG GAGTCGCCTCAGCGCTACACTACCTACACAACGAGTACGACCAGAAGGTTGTACATCGGGACCTTAAAGCGAGCAATATCATGCTCGATGCGGAGTTCAG TGCCCGTCTGGGCGATTTTGGTTTGGCTCGGGCCATTGACAACGAGAAGACCTCTTACGCTGAGCTGGAAGGTGTCCCAGGGACGATGGGGTACATCGCC CCAGAGTGCTTCCACACGGGGAAGGCCACATGTGAGTCTGATGTCTATGGGTTCGGCGCAGTGGTACTTGAAGTTGTCTGCGGGCAGAGGCCCTGGACTA AGATTGGTGGGTTCACGGCCTTAGTAGACTGGGTATGGTGGCTGCACCGAGAGGGGAGGATTCTGGAAGCCGTGGATAAGAGATTGGGGAATGAGTTTGT AGAGGAGGAGGCGAAACGTCTCCTCCTCCTTGGACTGGCTTGCTCACATCCAATTGCGAGCCAAAGACCCAACATGCAGCTGATCTATCAGATTGTATGC GGGTCGATGGAGGTGCCTAGAGTACCTCCTTTTAAACCCGCATTTATTTGGGCCCCAATGGTGGATCCAGAAGGAGAAGATGGGAGTGCGAGTAGTAGTA TGAGAGTTGATTTGACTCCCGATACGACTCCAATCACTTCGGGTTGGTCAGCTGTGAGTGAGGATTATAACAGTGGAACAGGTTATACAAACAGCTATTC TCCTGTTTGA
AA sequence Show only first row Show all	>Lus10009423 pacid=23149719 polypeptide=Lus10009423 locus=Lus10009423.g ID=Lus10009423.BGIv1.0 annot-version=v1.0 MAGSNPPCYSQNGLHLSNPPKHFPSLLPPFPPLSSQPPVNGSPPAAPPAYSSLRHRRRSQILHFLLLILAGASSISLTTSQQQPQIITENRRLGSPFTPA DYSTLAVVDPATISNGALQVTPDSAGNFTLSNRSGRILFNQTYKLWDEDDGSAGAGAGHRTASFNTSFLINIFRLTNASLPGEGLAFLIAPDLELPAGSS GQYLGLTNRESDGNSSNQILAVELDTFKQDFDPDANHLGLDVHSVRSLKTASLRDHGIQLAPAVTRFYLVWIQYDGRRKRIEVYMAENGTAKPETPILEA DDLDLKGIVNQYSYFGFAASTGNNTQLNCVLSWNLTVELLDPEEVGAVAGDDSSGSGVKIGVGIGVSAFVLILGGSMAAGWWWWRRKKAAEANPKLTGAL KSLPGMPREFDFKDLKKATNNFDEKLKLGQGGFGMVYKGVLPEDHVPVAVKKFSRENLKGQDDFLSELTIINRLRHKHLVRLLGWCHKNGTLLLVYDYMP NGSLDNHLFNNGFEDDTKNPTPLQWKLRYKIVTGVASALHYLHNEYDQKVVHRDLKASNIMLDAEFSARLGDFGLARAIDNEKTSYAELEGVPGTMGYIA PECFHTGKATCESDVYGFGAVVLEVVCGQRPWTKIGGFTALVDWVWWLHREGRILEAVDKRLGNEFVEEEAKRLLLLGLACSHPIASQRPNMQLIYQIVC GSMEVPRVPPFKPAFIWAPMVDPEGEDGSASSSMRVDLTPDTTPITSGWSAVSEDYNSGTGYTNSYSPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06740			Concanavalin A-like lectin pro...		Lus10009423 [exp]	0	1
AT4G02940			oxidoreductase, 2OG-Fe(II) oxy...		Lus10008166 [exp]	6.5	0.7637
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10034872 [exp]	6.9	0.7872
AT2G30080		ATZIP6, ZIP6	ZIP metal ion transporter fami...		Lus10031306 [exp]	7.1	0.7444
AT5G44790		HMA7, RAN1	copper-exporting ATPase / resp...		Lus10031840 [exp]	7.7	0.7820
AT1G31770		ABCG14	ATP-binding cassette G14, ATP-...		Lus10035692 [exp]	16.1	0.7272
AT3G01720			unknown protein		Lus10014878 [exp]	18.7	0.7123
AT4G19110			Protein kinase superfamily pro...		Lus10038123 [exp]	34.1	0.7821
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10005839 [exp]	36.4	0.7541
AT1G01040		SIN1, EMB76, EM...	SHORT INTEGUMENTS 1, EMBRYO DE...		Lus10030177 [exp]	48.5	0.7101
AT5G06740			Concanavalin A-like lectin pro...		Lus10028699 [exp]	49.8	0.6812

Compare expression of checked genes

Lus10009423 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.