Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06240 66 / 2e-11 F-box family protein (.1) AT3G17480 59 / 3e-09 F-box and associated interaction domains-containing protein (.1) AT4G12560 59 / 3e-09 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT3G21120 56 / 2e-08 F-box and associated interaction domains-containing protein (.1) AT3G23260 49 / 3e-06 F-box and associated interaction domains-containing protein (.1) AT3G16210 49 / 5e-06 F-box family protein (.1) AT3G07870 48 / 8e-06 F-box and associated interaction domains-containing protein (.1) AT5G42460 47 / 1e-05 F-box and associated interaction domains-containing protein (.1) AT3G17530 44 / 0.0001 F-box and associated interaction domains-containing protein (.1) AT3G23880 42 / 0.0004 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018008 [exp] 150 / 9e-41 AT3G16210 82 / 6e-17 F-box family protein (.1) Lus10014935 [exp] 139 / 1e-36 AT3G06240 84 / 2e-17 F-box family protein (.1) Lus10001105 [exp] 127 / 3e-32 AT3G06240 109 / 3e-26 F-box family protein (.1) Lus10028961 [exp] 114 / 1e-27 AT4G12560 81 / 2e-16 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10006063 [exp] 110 / 1e-27 ND / Lus10027824 [exp] 107 / 2e-25 AT3G06240 78 / 2e-15 F-box family protein (.1) Lus10018095 [exp] 100 / 9e-23 ND 49 / 4e-06 Lus10029725 [exp] 99 / 2e-22 AT3G06240 74 / 3e-14 F-box family protein (.1) Lus10023372 [exp] 98 / 7e-22 AT3G16210 67 / 5e-12 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G011400 [exp] 85 / 1e-17 AT4G12560 142 / 2e-38 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G318300 [exp] 67 / 5e-12 AT3G06240 140 / 7e-38 F-box family protein (.1) Potri.014G162600 [exp] 67 / 6e-12 AT3G07870 467 / 9e-164 F-box and associated interaction domains-containing protein (.1) Potri.017G058000 [exp] 66 / 9e-12 AT3G06240 138 / 5e-37 F-box family protein (.1) Potri.012G014700 [exp] 64 / 4e-11 AT1G12170 66 / 1e-11 F-box family protein (.1) Potri.002G223000 [exp] 64 / 8e-11 AT3G07870 467 / 5e-164 F-box and associated interaction domains-containing protein (.1) Potri.008G006900 [exp] 63 / 2e-10 AT4G12560 95 / 3e-21 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.008G006800 [exp] 62 / 2e-10 AT4G12560 100 / 4e-23 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.017G058900 [exp] 61 / 7e-10 AT3G06240 132 / 2e-34 F-box family protein (.1) Potri.008G199800 [exp] 61 / 1e-09 AT3G23880 182 / 3e-53 F-box and associated interaction domains-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009424 pacid=23149682 polypeptide=Lus10009424 locus=Lus10009424.g ID=Lus10009424.BGIv1.0 annot-version=v1.0 ATGCCACGTGGTAGCTACATCCCACAAGACTTAGCCACCGACATCTTGCTAAGGCTCTCCGACGTTTCAGCCATCGCCCGATTTCGCTCCGTCAATAAGC AATGCCTCGCTCTTCTCTCTGACCCCAAATTCCTTCAACGGATTATTTGGTTCCACCCGCAAAACAACGAGAAGGAGAAGAAAGAGTCTACTAACGTTTT GATCCTGTGTAACAAAACATATCTCAGAAGTTCTCGTATCTGGCTCTCCTACTCTTTGCTCTCTTACAACAAGCGGAATGAAAAGCTGACCCCGATCGAA CCCAGTACCCAACTGAAAAAACCGACATATTTAAAATATCAAAAGGTACCGATGATTCCTGAAGCGCGTCCTCCGAGAGAGTACGACTCGAATCGGTTCG AAATCGAGGGTTGTTGTGACGGTATATTCTGTATAAATGATACGGCTTCGAAGGTACCAGAAGATATCATCCTATGGAACCCTTCAACTTCCGAGACAAA GGTCGTGCCGGCTTCTCCCCAAGTTCCGGCCCAACCTATTTTCTGGCAACAAATTGGGTTTGGTTACGACTCGAAAACTCGAGATTACAAGGTCGTGAGG AGAAGAATCCTCAACCACTACGATAGGCGCACCCTGATTGTGGCCGATATTTATAGCTTGAGGAACGATTCGTGGAGGGAGCACTCATGCATATCAATCG ATAAACATATTGACTACTCCCGGTCCTGCTCACTCCCGACTCAAAACGTTGCTCGATCTCGAAACTCGGGACTAGGAAGAGTCTACTGGCACTCGGACAG GCGCATTTCCTCGTTCGACATGGTTGAGGAAGTGTTTGATGACGTCTCCCACAAGAGGTTCCCTAAGAAGCTCAAGAGAAGCATGTCCTACGGTACGAAG GGCCCCACCGAGGACATGCACGTGCAGACCACGTCGAACGAGTTCATGATGTCTGCCGTTTTCGGAAACCCTAGAGGAGTTTACGAGATATGGGGATTGT TGGATTTCAGGATACGAAGATCATGGACTAAGTTGTTTGTAGTTTCGAAGTTTTTAGTCTCCGACGTCCGTATGGGTCTCGGACCTCAAGGAACGGGTGG TGGATGCTACATGTTTCTTAAGATTGACGACGGGAAGTTGTTGGGTTTTGATCCGGAGACCGAAGAGGTTAAGAAGAATATTCTCCATATTCGAGCTGTA CCCCGAAAGTTGCTCAATATTTCTCGGAAATTGGATTACAACCCCATGGCTTACAGTTATGTTCCGTCGAAAGTCTCGATTTCGAGGCTGACTGAGCAGA CATAA
AA sequence Show only first row Show all	>Lus10009424 pacid=23149682 polypeptide=Lus10009424 locus=Lus10009424.g ID=Lus10009424.BGIv1.0 annot-version=v1.0 MPRGSYIPQDLATDILLRLSDVSAIARFRSVNKQCLALLSDPKFLQRIIWFHPQNNEKEKKESTNVLILCNKTYLRSSRIWLSYSLLSYNKRNEKLTPIE PSTQLKKPTYLKYQKVPMIPEARPPREYDSNRFEIEGCCDGIFCINDTASKVPEDIILWNPSTSETKVVPASPQVPAQPIFWQQIGFGYDSKTRDYKVVR RRILNHYDRRTLIVADIYSLRNDSWREHSCISIDKHIDYSRSCSLPTQNVARSRNSGLGRVYWHSDRRISSFDMVEEVFDDVSHKRFPKKLKRSMSYGTK GPTEDMHVQTTSNEFMMSAVFGNPRGVYEIWGLLDFRIRRSWTKLFVVSKFLVSDVRMGLGPQGTGGGCYMFLKIDDGKLLGFDPETEEVKKNILHIRAV PRKLLNISRKLDYNPMAYSYVPSKVSISRLTEQT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06240			F-box family protein (.1)		Lus10009424 [exp]	0	1

Compare expression of checked genes

Lus10009424 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.