Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09790 40 / 0.0006 UBQ8 ubiquitin 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009185 [exp] 92 / 3e-22 AT5G65930 190 / 2e-54 POTATO KINESIN-LIKE CALMODULIN-BINDING PROTEIN, kinesin-like calmodulin-binding protein (ZWICHEL) (.1), kinesin-like calmodulin-binding protein (ZWICHEL) (.2), kinesin-like calmodulin-binding protein (ZWICHEL) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G100200 [exp] 44 / 7e-05 AT2G17200 478 / 2e-164 ubiquitin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00240 [flax] [poplar] ubiquitin Ubiquitin family
Representative CDS sequence Show only first row Show all	>Lus10009425 pacid=23149738 polypeptide=Lus10009425 locus=Lus10009425.g ID=Lus10009425.BGIv1.0 annot-version=v1.0 ATGGCCACTGGTTCCATCATGTTCAAGATCCGAGGAGGGAAAGTTGTGCCCAAGTGCACATTGGACATCACGTCAACGGTTCGCCAACTGAAGATGGCGA TCAAAGACCAAATCAACGTGGAGGTGCACAGCCAAACTCTTACGTACCGGGGGACTGTTTTGGAGGACGGCGAGACTCTCGACTCCTACGGCATCAACGT TGACCGAGCTCATGTCAACGTCGAGCTCACGGTGACGGATCGGGAAGCCCCGTGCGTTGTGACCGTCGTGCACACCTCGTCGAAGGGAAAGACGGCTGAG AAGAAGTTCAGCGTCAAAGGTTCGTTCACTGTGCACATGTTGCAAGAAATGGTGGCTGACAAGTTCCCCAAGGATGTGCAACAATCTACCCTTGTCCAAC TCGCTACTCATGGGAGGGTTATGGACCGACGTGAAGAGCTACACAGTTACTATGTGGTGGAGGGGTCGATCTTGTTGGCCGCTGAAGATTTCAGATTTGT CTACGGCCAGGGTGACGGGGATAGTACCGATGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGCTGCTTGGCCGTCGTGGTCGTCGGAAAATTGA
AA sequence Show only first row Show all	>Lus10009425 pacid=23149738 polypeptide=Lus10009425 locus=Lus10009425.g ID=Lus10009425.BGIv1.0 annot-version=v1.0 MATGSIMFKIRGGKVVPKCTLDITSTVRQLKMAIKDQINVEVHSQTLTYRGTVLEDGETLDSYGINVDRAHVNVELTVTDREAPCVVTVVHTSSKGKTAE KKFSVKGSFTVHMLQEMVADKFPKDVQQSTLVQLATHGRVMDRREELHSYYVVEGSILLAAEDFRFVYGQGDGDSTDEEEEEEEEEEEEEEEEEEEEEEE EEEEEEEEEEEEEEEAAWPSWSSEN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10009425 [exp]	0	1
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10014177 [exp]	5.0	0.8101
AT3G50310		MKKK20, MAPKKK2...	MAPKK kinase 20, mitogen-activ...		Lus10029023 [exp]	5.8	0.7042
AT3G50310		MKKK20, MAPKKK2...	MAPKK kinase 20, mitogen-activ...		Lus10029019 [exp]	8.5	0.7020
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10030517 [exp]	10.6	0.7668
AT4G35040	bZIP	bZIP19	Basic-leucine zipper (bZIP) tr...		Lus10016368 [exp]	14.1	0.7395
AT3G14470			NB-ARC domain-containing disea...		Lus10011855 [exp]	14.7	0.6882
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Lus10035700 [exp]	21.2	0.7509
AT1G67623			F-box family protein (.1)		Lus10030790 [exp]	23.7	0.7390
AT5G01900	WRKY	ATWRKY62, WRKY6...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10022736 [exp]	24.5	0.7607
					Lus10000801 [exp]	25.7	0.6639

Compare expression of checked genes

Lus10009425 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.