Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65930 1725 / 0 PKCBP, ZWI POTATO KINESIN-LIKE CALMODULIN-BINDING PROTEIN, kinesin-like calmodulin-binding protein (ZWICHEL) (.1), kinesin-like calmodulin-binding protein (ZWICHEL) (.2), kinesin-like calmodulin-binding protein (ZWICHEL) (.3) AT4G27180 277 / 3e-79 KATB, ATK2 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA B, kinesin 2 (.1) AT5G27550 276 / 1e-78 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G22610 278 / 2e-77 Di-glucose binding protein with Kinesin motor domain (.1.2) AT5G54670 270 / 8e-77 KATC, ATK3 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C, kinesin 3 (.1) AT1G72250 275 / 7e-76 Di-glucose binding protein with Kinesin motor domain (.1.2) AT5G27000 271 / 2e-75 KATD, ATK4 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) AT4G05190 266 / 6e-75 ATK5 kinesin 5 (.1) AT4G21270 263 / 5e-74 KATAP, ATK1 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1) AT2G47500 263 / 1e-72 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006064 [exp] 2281 / 0 AT5G65930 1877 / 0.0 POTATO KINESIN-LIKE CALMODULIN-BINDING PROTEIN, kinesin-like calmodulin-binding protein (ZWICHEL) (.1), kinesin-like calmodulin-binding protein (ZWICHEL) (.2), kinesin-like calmodulin-binding protein (ZWICHEL) (.3) Lus10035954 [exp] 285 / 1e-79 AT2G22610 1302 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10005582 [exp] 268 / 5e-74 AT1G72250 1109 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10013714 [exp] 269 / 6e-74 AT1G72250 1098 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10004487 [exp] 259 / 1e-72 AT5G27550 881 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10025708 [exp] 263 / 2e-72 AT2G22610 1238 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10029865 [exp] 261 / 8e-72 AT5G27000 1014 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10035838 [exp] 256 / 2e-71 AT5G54670 1076 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C, kinesin 3 (.1) Lus10036621 [exp] 255 / 3e-71 AT5G54670 1075 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C, kinesin 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G146700 [exp] 1885 / 0 AT5G65930 1864 / 0.0 POTATO KINESIN-LIKE CALMODULIN-BINDING PROTEIN, kinesin-like calmodulin-binding protein (ZWICHEL) (.1), kinesin-like calmodulin-binding protein (ZWICHEL) (.2), kinesin-like calmodulin-binding protein (ZWICHEL) (.3) Potri.001G455300 [exp] 1878 / 0 AT5G65930 1881 / 0.0 POTATO KINESIN-LIKE CALMODULIN-BINDING PROTEIN, kinesin-like calmodulin-binding protein (ZWICHEL) (.1), kinesin-like calmodulin-binding protein (ZWICHEL) (.2), kinesin-like calmodulin-binding protein (ZWICHEL) (.3) Potri.005G030271 [exp] 268 / 9e-76 AT5G27550 865 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.013G020700 [exp] 266 / 3e-75 AT5G27550 862 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.013G011500 [exp] 269 / 1e-74 AT5G27000 1081 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Potri.002G110600 [exp] 268 / 3e-74 AT2G22610 1057 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.014G125700 [exp] 267 / 4e-74 AT2G47500 1218 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.011G140000 [exp] 269 / 5e-74 AT1G72250 1201 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.004G031600 [exp] 263 / 7e-74 AT4G21270 1076 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1) Potri.001G416300 [exp] 261 / 7e-74 AT5G54670 1090 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C, kinesin 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF09379 [flax] [poplar] FERM_N FERM N-terminal domain CL0072 [flax] [poplar] PF00784 [flax] [poplar] MyTH4 MyTH4 domain CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain CL0632 [flax] [poplar] FERM_M PF00373 [flax] [poplar] FERM_M FERM central domain
Representative CDS sequence Show only first row Show all	>Lus10009426 pacid=23149720 polypeptide=Lus10009426 locus=Lus10009426.g ID=Lus10009426.BGIv1.0 annot-version=v1.0 ATGGCGCAGAGTCTACGGCGGAGTGTGTCTCCGTATGCGTCTAGCTACGGTAATGGAAGTGAAGTGAACATCCATTTGCATTCGCCGTCGTCATTGACGA ATGGGGATGGATACGAAAGTGATAGCTCCAACATTTCATCGACTACACAGATGACTCCTTTAATGGCTGTACCGGCGGAACTAGCTGGCGCTATACCTTT GCTTGAAAGATTCCAGGTTGAGGGGTTCTTAAGAATGATGCAGAAACAGATTCAGTCAACAGGAAGACGTGGATTTTTCTCCAAGAAACCTCCAGGGCCT CAAGTTAAAGAAAAATTCACGTTTGAGGATATGCTCTGTTTCCAAAAGGATCCTATCCCGACTTCGTTACTTAAACTCAACGGTGATTTGGTAGGGCGAG CTACTAAGCTGTTTCAGATCATTTTGAAGTACATGGGTGTTGATCCGTCGGATCGAGCATCACCAGCGAGTTTGGATGACCGGATTGAGCTTGTTGGGAA ACTGTACAAGCATACATTGAAGCGTGCGGAGCTCCGAGATGAACTTTTTGCTCAGATTTCTAAACAAACGAGGAACAACCCTGACAAGCAATATTTGATC AAAGCATGGGAGCTCATGTATTTATGTGCATCCTCAATGCCCCCTAGCAAGGATATTGGTGGATATCTTTCCGAGTATATTCATGATGTAGCAAATGGTG CTGGTACGCACTCAGAAGTGCAGATCTTAGCCGTAAATACATTAAATGCTCTGAAGCGGTCTGTCAAGTCTGGTCCTAGACATACAATACCAGGTCGTGA GGAAATTGAAGCTCTTCTTACTGGTAGAAAGCTTACAACAATAGTGTTTTTCTTGGATGAAACGTTTGAAGAGATCACTTATGACATGGCCACCACCGTC TCCGATTCAGTTGAGGAACTTGCTGGCATAATTAAATTGACGGCATATTCTAGTTTCAGTCTCTCTGAGTGTCGCAAAGTTGTTACAGGCTCCAAGTCAC CTGACCCTGGAAATGAGGAGTACATTGGGTTAGATGACAACAAGTATATCGGGGATTTGCTAGCTGAATTTAAGGCAGCCAAAGAGCGAAGCAAAGGAGA AATTTTACAGTGCAAGCTTATATTCAAGAAAAAGCTGTTCCGCGAATCCGATGAAGTTATTGAAGACCCAATGTTTGTGCAATTATCATATGTCCAGTTA CAACACGATTATGTGCTAGGGAACTATCCAGTAGGAAGGGATGATGCTGCACAATTGTCTGCACTGCAGATCTTTGTTGAAATTGGATATGCTGGCAGCC CAGAATCGTGCTCCGATTGGACAACTCTCCTTGAAAGATTCCTACCCAGGCAAATTGCCATCACGCGAGGAAAACGGGAATGGGAGATGGATATTCTTTC TCGTTATCGTTCGTTGGAAAATCTGACAAAAGATGATGGGAGACAACAATTTCTACGCATATTGAGGAGTCTTCCTTATGGAAATTCAGTTTTCTTCAGT GTTCGCAAGATTGATGATCCTATCGGTCTTTTGCCGGGAAGAATAATTCTAGGGATCAACAAACGTGGGGTGCACTTCTTCCGGCCAGTCCCAAAGGAAT ACTTACATTCTGCCGAGCTGAGAGACATAATGCAGTTTGGCAGTAGCAACACTGCTGTTTTCTTCAAGATGAGAGTTGCCGGTGTTCTTCACATCTTCCA GTTTGAGACCAAACAGGGAGAAGAAATATGTGTTGCCCTTCAAACACATATAAACGATGTCATGTTGCGTCGATACTCCAAAGCTCGCTCAACTGCTAGC AGCTTAACGAATGGAGATGTTTCTAGTAATTTGAAAGCTCCCAATGTGGAGATGTATGAAAAACGTATCCAGGACTTATCAAAGAGCATTGAAGAATTCC AGAGAAATACTGATCAGTTAGTTCAAGAATTGCACGCGAGGCAGGAACAAGAGCTAAGGCTGCAAGATGAACTGGAAGCTTTGAGAGATTCATTCAGGTC CGAGCAGCAAAACTTGGCAGTTGTTACAGGTGACCGTGACAGGCTTAAATCCTTGTGCACTGAAAAGGATACAGCTCTTCAGACTGCATTGTCGGAAAAA CGGAACATGGAATCAAAGCTGTCTAATCTTGGTGATCTAGCATCAATGAAATCAAGTCTGGCTGCAAAAAATTCCCAGATTCTGCAGGAGTCCGTCACGC TGCAAGAAGAGCTGAAACAACAGAAAGAGGAGTTGCGTCTAATGCAAGAAAGTTTAGCGAAGGTCAAGAACGAAAACATGCTATTGGAAGAGAAGATGTC CAGACTGGACAAGAAGAAAATTGAAGAGATTGAAGGGCGCGAAAGGAACTTCGATCAGGAACGGAGAGCACTGAAGCTTCGTATGACCGAGCTAGAGAAT AAGCTCGAAGTTGCCATCCAAGACTGTGCCATCGCAAAGTCTACCCTGGCAAATCGAGAGGCCGATTATACCGTCTTGCAGAATAATCTGAAAGAGTTGG AGGATCTACGAGAAATGAAGGAGGATATCGATAGAAAGAACGAGCAAACTGCTTCGATCTTGAAAATGCAAGGGGCTCAGCTTGCTGAGATGGAAGTGCT GTACAAGGAAGAACAAATACTCCGGAAACGGTACTTCAATACAATTGAAGATATGAAAGGCAAGATAAGAGTGTACTGTCGTGTACGGCCTCTAAACGAC AAAGAAATCTCCGAAAGGGAAAGACAATTGGTCTCGAGCACCGATGAGTTCACAGTAGAGCATCCGTGGAAGGATGACAAGGCAAAACAGCATCTGTACG ATCGCGTCTTTGATGGCGGTGCGTCGCAGGAGAATGTGTTCGAAGATACGCGATACCTGGTCCAGTCTGCTGTAGACGGGTACAACGTTTGTATATTTGC CTATGGTCAAACCGGTTCGGGCAAGACATTTACGATATATGGCTCGGATGGCAATCCCGGACTCACACTAAGAGCCACTGCAGAAATCTTCAACATTATC AAGCGAGACAGCAAGAAATTCTCGTATTCACTGAAGGCATACATAGTTGAGTTGTATCAAGATACACTCGTAGACCTTCTACTACCGAAGAGCGCAAAGC CTTCGAGACTCGACATCAAAAAGGACTCGAAGGGTATGGTCTCTATCGAAAACGTGACAGTCAAGTCAATCTCGTCGTTCGAGGATCTAAAATCGATCAT CCAACAAGGATCAGAGCGTCGGCACACATCCGGGACTCAAATGAATGAAGAGAGCTCCAGGTCTCACTTGATTCTTTCGGTCGTGATCGAGAGCACGAAC CTCCAGACACAATCCGTTGCAAGGGGAAAGATAAGTTTCGTCGACCTTGCTGGCTCGGAACGAGTGAAGAAATCGGGCTCATCGGGAAACCAACTTAAAG AAGCACAAAGCATCAACAAATCCCTCTCAGCACTCGGCGACGTGATCAGCGCACTCTCCTCTGGCGGCCAGCACATACCATACCGGAATCACAAGCTGAC AATGCTGATGAGCGATTCCCTCGGCGGGAATGCCAAGACGCTCATGTTCGTAAACGTTTCTCCGGCTGAATCGAGCCTTGACGAGACGTACAACTCACTA ACGTACGTCCCAAGTAACCCTTCCCTCCCAACATTTGAAAATTCTGCTTCAGATACATTGTCTTTACTGATTTCGAAAAACTTGTGTGCAGGTATGCATC GAGAGTGCGAGCCATAG
AA sequence Show only first row Show all	>Lus10009426 pacid=23149720 polypeptide=Lus10009426 locus=Lus10009426.g ID=Lus10009426.BGIv1.0 annot-version=v1.0 MAQSLRRSVSPYASSYGNGSEVNIHLHSPSSLTNGDGYESDSSNISSTTQMTPLMAVPAELAGAIPLLERFQVEGFLRMMQKQIQSTGRRGFFSKKPPGP QVKEKFTFEDMLCFQKDPIPTSLLKLNGDLVGRATKLFQIILKYMGVDPSDRASPASLDDRIELVGKLYKHTLKRAELRDELFAQISKQTRNNPDKQYLI KAWELMYLCASSMPPSKDIGGYLSEYIHDVANGAGTHSEVQILAVNTLNALKRSVKSGPRHTIPGREEIEALLTGRKLTTIVFFLDETFEEITYDMATTV SDSVEELAGIIKLTAYSSFSLSECRKVVTGSKSPDPGNEEYIGLDDNKYIGDLLAEFKAAKERSKGEILQCKLIFKKKLFRESDEVIEDPMFVQLSYVQL QHDYVLGNYPVGRDDAAQLSALQIFVEIGYAGSPESCSDWTTLLERFLPRQIAITRGKREWEMDILSRYRSLENLTKDDGRQQFLRILRSLPYGNSVFFS VRKIDDPIGLLPGRIILGINKRGVHFFRPVPKEYLHSAELRDIMQFGSSNTAVFFKMRVAGVLHIFQFETKQGEEICVALQTHINDVMLRRYSKARSTAS SLTNGDVSSNLKAPNVEMYEKRIQDLSKSIEEFQRNTDQLVQELHARQEQELRLQDELEALRDSFRSEQQNLAVVTGDRDRLKSLCTEKDTALQTALSEK RNMESKLSNLGDLASMKSSLAAKNSQILQESVTLQEELKQQKEELRLMQESLAKVKNENMLLEEKMSRLDKKKIEEIEGRERNFDQERRALKLRMTELEN KLEVAIQDCAIAKSTLANREADYTVLQNNLKELEDLREMKEDIDRKNEQTASILKMQGAQLAEMEVLYKEEQILRKRYFNTIEDMKGKIRVYCRVRPLND KEISERERQLVSSTDEFTVEHPWKDDKAKQHLYDRVFDGGASQENVFEDTRYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSDGNPGLTLRATAEIFNII KRDSKKFSYSLKAYIVELYQDTLVDLLLPKSAKPSRLDIKKDSKGMVSIENVTVKSISSFEDLKSIIQQGSERRHTSGTQMNEESSRSHLILSVVIESTN LQTQSVARGKISFVDLAGSERVKKSGSSGNQLKEAQSINKSLSALGDVISALSSGGQHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESSLDETYNSL TYVPSNPSLPTFENSASDTLSLLISKNLCAGMHRECEP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65930		PKCBP, ZWI	POTATO KINESIN-LIKE CALMODULIN...		Lus10009426 [exp]	0	1
AT5G65930		PKCBP, ZWI	POTATO KINESIN-LIKE CALMODULIN...		Lus10006064 [exp]	1.0	0.9586
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10038858 [exp]	1.4	0.9350
AT5G17250			Alkaline-phosphatase-like fami...		Lus10005793 [exp]	3.6	0.9048
AT5G61990			Pentatricopeptide repeat (PPR)...		Lus10036020 [exp]	6.7	0.9311
AT3G16890		PPR40	pentatricopeptide (PPR) domain...		Lus10043104 [exp]	9.8	0.9097
AT2G36490		DML1, ROS1	REPRESSOR OF SILENCING1, demet...		Lus10035576 [exp]	9.9	0.9022
AT5G01460			LMBR1-like membrane protein (....		Lus10002488 [exp]	10.5	0.8818
AT1G08130		ATLIG1	DNA ligase 1 (.1)		Lus10016149 [exp]	10.8	0.9144
AT5G05240			Uncharacterised conserved prot...		Lus10029030 [exp]	10.9	0.9016
AT4G00560			NAD(P)-binding Rossmann-fold s...		Lus10040928 [exp]	11.1	0.8882

Compare expression of checked genes

Lus10009426 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.