Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09570 790 / 0 CPK4, ATCPK4 calcium-dependent protein kinase 4 (.1) AT1G35670 790 / 0 CPK11, ATCDPK2, ATCPK11 calcium-dependent protein kinase 2 (.1) AT5G23580 711 / 0 ATCDPK9, CPK12, CDPK9, ATCPK12 CALCIUM-DEPENDENT PROTEIN KINASE 12, ARABIDOPSIS THALIANA CALMODULIN-LIKE DOMAIN PROTEIN KINASE 9, calmodulin-like domain protein kinase 9 (.1) AT3G10660 698 / 0 ATCPK2, CPK2 calmodulin-domain protein kinase cdpk isoform 2 (.1) AT5G04870 692 / 0 AK1, ATCPK1, CPK1 calcium dependent protein kinase 1 (.1) AT4G35310 686 / 0 CPK5, ATCPK5 calmodulin-domain protein kinase 5 (.1) AT2G17290 681 / 0 ATCPK6, ATCDPK3, CPK6 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) AT2G38910 667 / 0 CPK20 calcium-dependent protein kinase 20 (.1) AT4G38230 659 / 0 CPK26, ATCPK26 ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 26, calcium-dependent protein kinase 26 (.1.2.3) AT5G19360 612 / 0 CPK34 calcium-dependent protein kinase 34 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017911 [exp] 899 / 0 AT1G35670 793 / 0.0 calcium-dependent protein kinase 2 (.1) Lus10014820 [exp] 880 / 0 AT1G35670 777 / 0.0 calcium-dependent protein kinase 2 (.1) Lus10039623 [exp] 746 / 0 AT1G35670 793 / 0.0 calcium-dependent protein kinase 2 (.1) Lus10029547 [exp] 745 / 0 AT1G35670 790 / 0.0 calcium-dependent protein kinase 2 (.1) Lus10022986 [exp] 692 / 0 AT4G35310 950 / 0.0 calmodulin-domain protein kinase 5 (.1) Lus10001384 [exp] 692 / 0 AT4G35310 949 / 0.0 calmodulin-domain protein kinase 5 (.1) Lus10008958 [exp] 691 / 0 AT5G04870 877 / 0.0 calcium dependent protein kinase 1 (.1) Lus10028862 [exp] 690 / 0 AT5G04870 940 / 0.0 calcium dependent protein kinase 1 (.1) Lus10026559 [exp] 687 / 0 AT2G17290 952 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G083200 [exp] 836 / 0 AT4G09570 835 / 0.0 calcium-dependent protein kinase 4 (.1) Potri.013G112500 [exp] 824 / 0 AT1G35670 815 / 0.0 calcium-dependent protein kinase 2 (.1) Potri.T012800 [exp] 775 / 0 AT1G35670 795 / 0.0 calcium-dependent protein kinase 2 (.1) Potri.008G014700 [exp] 707 / 0 AT5G04870 922 / 0.0 calcium dependent protein kinase 1 (.1) Potri.010G244800 [exp] 703 / 0 AT5G04870 899 / 0.0 calcium dependent protein kinase 1 (.1) Potri.004G207300 [exp] 701 / 0 AT2G17290 969 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) Potri.009G168600 [exp] 690 / 0 AT2G17290 968 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) Potri.016G066700 [exp] 687 / 0 AT3G10660 834 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1) Potri.006G200600 [exp] 681 / 0 AT5G04870 842 / 0.0 calcium dependent protein kinase 1 (.1) Potri.006G199400 [exp] 670 / 0 AT2G38910 899 / 0.0 calcium-dependent protein kinase 20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10009427 pacid=23149697 polypeptide=Lus10009427 locus=Lus10009427.g ID=Lus10009427.BGIv1.0 annot-version=v1.0 ATGAGGAGGTCGGCGCGACCAAGGAAACAAACCCTATCGGTCCTCCCCCACCAGACCGCGAGGCTACGAGATCATTACGTGTTGGGAAAGAAACTGGGGC AGGGCCAGTTCGGGATCACGTACCTTTGCACCCACAAGGCTTCCAACATTGTCTACGCGTGCAAGTCAATCTCGAAGAGGAAGCTCCTGTGCAAGGAAGA CTACGAAGATGTCTGGCGCGAGATCCAGATCATGCACCACTTGTCGGAGCATCCACACGTGGTGAAGATCAAGGACACATACGAGGACTCGATGTTCGTT CATCTGGTGATGGAGTTGTGCGTTGGTGGCGAATTGTTCGATAGGATCGTGGCTAAAGGGCATTATAGCGAGAAAGAGGCCGCCAAGTTGATCAAGACCA TCGTCGGAGTGGTGGAGACTTGCCATTCTTTGGGTGTGATGCATAGAGACCTTAAGCCGGAGAACTTCTTGTTCGATAACCCTAGCGACGATGCCAAGCT CAAGTCCATCGATTTCGGCCTCTCCATTTTCTTCAAGCCAGGGCAATGCTTCATTGATGTTGTGGGGAGTCCGTACTATGTTGCCCCAGAGGTTCTACTA AAAAACTATGGACATGAAGTTGATGTATGGAGTGCTGGTGTCATTCTTTACATTTTACTATGCGGAGTCCCTCCCTTTTGGGCAGAAACGGAATCAGGAA TTTTCCGACAAATTCTACATGGGAAGATAGACTTTGTCTCAGAACCATGGCCTAGCATTTCTGACAGTGCAAAAGAACTCATAAGAAAGATGCTTGACAA GGACCCCAAGAGCAGAATTACTGCCCATGAAGTTTTGTGCCATCCATGGATTGTGGACGATCTTGCCCCCGACAAGCCACTGGATTCGGCAGTTTTGTCG CGGTTGAAGCAATTCTATGCCATGAACAAGCTTAAGAAGATGGCCTTACGTGTGATAGCGGAAAGAATGTCGGAAGAAGAGATCGGAGGGTTGAAGGAAT TGTTCAAGATGATAGATACAGATAACAGTGGAACAATCACATTTGAAGAGCTTAAGGATGGCTTGCAAAGAGTTGGTTCTGAACTAATGGAGTCTGAGAT CAAAGTCTTAATGGAAGCTGCCGATATTGACAACAGTGGGACACTAGACTACGGTGAATTTCTGGCTGCGACACTGCATCTGAACAAGATGGAAAGGGAA GACAACTTATCTGCGGCATTCGCATACTTTGACAAAGATGGTAGTGGCTACATCACCATTGATGAGCTCCAACAAGCTTGCAAGGATTTTGGGGTTGGAG GTGACGCTTTGGAAGAGATGATCAAAGAAATCGACCAAGACAATGATGGAAGAATTGATTATGAAGAGTTTACTGCCATGATGAGGCAAAGCTCCGGCGA CGGAGGGATAGCGAGGCCTAGAAGCATGAGAGGCAGTATCAGTGTCAACTTGGTTGATGCATTGCGAGTGCCGAACCCTAATTGA
AA sequence Show only first row Show all	>Lus10009427 pacid=23149697 polypeptide=Lus10009427 locus=Lus10009427.g ID=Lus10009427.BGIv1.0 annot-version=v1.0 MRRSARPRKQTLSVLPHQTARLRDHYVLGKKLGQGQFGITYLCTHKASNIVYACKSISKRKLLCKEDYEDVWREIQIMHHLSEHPHVVKIKDTYEDSMFV HLVMELCVGGELFDRIVAKGHYSEKEAAKLIKTIVGVVETCHSLGVMHRDLKPENFLFDNPSDDAKLKSIDFGLSIFFKPGQCFIDVVGSPYYVAPEVLL KNYGHEVDVWSAGVILYILLCGVPPFWAETESGIFRQILHGKIDFVSEPWPSISDSAKELIRKMLDKDPKSRITAHEVLCHPWIVDDLAPDKPLDSAVLS RLKQFYAMNKLKKMALRVIAERMSEEEIGGLKELFKMIDTDNSGTITFEELKDGLQRVGSELMESEIKVLMEAADIDNSGTLDYGEFLAATLHLNKMERE DNLSAAFAYFDKDGSGYITIDELQQACKDFGVGGDALEEMIKEIDQDNDGRIDYEEFTAMMRQSSGDGGIARPRSMRGSISVNLVDALRVPNPN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09570		CPK4, ATCPK4	calcium-dependent protein kina...		Lus10009427 [exp]	0	1
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10024584 [exp]	1.7	0.9559
AT3G60160		ATMRP9, ABCC9	ATP-binding cassette C9, multi...		Lus10011875 [exp]	2.0	0.9483
AT5G43360		PHT1;3, ATPT4, ...	PHOSPHATE TRANSPORTER 3, phosp...		Lus10011826 [exp]	2.2	0.9358
AT4G31680	B3	REM8	Transcriptional factor B3 fami...		Lus10010080 [exp]	2.4	0.9249
AT5G43350		PHT1;1, ATPT1	ARABIDOPSIS THALIANA PHOSPHATE...		Lus10021191 [exp]	2.8	0.9185
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Lus10007640 [exp]	3.2	0.9549
AT1G09790		COBL6	COBRA-like protein 6 precursor...		Lus10029360 [exp]	3.5	0.9087
AT1G08170			Histone superfamily protein (....		Lus10041351 [exp]	4.6	0.9523
AT3G02040		AtGDPD1, SRG3	Glycerophosphodiester phosphod...		Lus10041535 [exp]	6.0	0.8930
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Lus10038923 [exp]	7.4	0.9087

Compare expression of checked genes

Lus10009427 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.