Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22710 417 / 1e-143 SUT1, ATSUC2, SUC2 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) AT1G71890 409 / 2e-140 SUC5, ATSUC5 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) AT1G71880 393 / 4e-134 ATSUC1, SUC1 ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 1, sucrose-proton symporter 1 (.1) AT2G14670 366 / 5e-124 ATSUC8 sucrose-proton symporter 8 (.1) AT5G06170 363 / 6e-123 ATSUC9 sucrose-proton symporter 9 (.1) AT5G43610 363 / 1e-122 ATSUC6 sucrose-proton symporter 6 (.1) AT1G66570 361 / 5e-122 ATSUC7 sucrose-proton symporter 7 (.1.2.3) AT1G09960 257 / 2e-81 ATSUC4, SUC4, ATSUT4, SUT4 sucrose transporter 4 (.1) AT2G02860 219 / 4e-67 ATSUT2, ATSUC3, SUT2 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017910 [exp] 486 / 1e-170 AT1G71890 693 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10029766 [exp] 431 / 1e-148 AT1G22710 655 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Lus10014821 [exp] 414 / 1e-143 AT1G71890 532 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10018915 [exp] 370 / 7e-125 AT1G71890 616 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10028616 [exp] 370 / 1e-124 AT1G71890 617 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10028614 [exp] 361 / 2e-121 AT1G71890 603 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10018914 [exp] 351 / 2e-117 AT1G71890 593 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10007702 [exp] 343 / 6e-115 AT1G22710 588 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Lus10032815 [exp] 279 / 1e-89 AT1G09960 694 / 0.0 sucrose transporter 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G115200 [exp] 407 / 3e-139 AT1G22710 643 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Potri.019G085800 [exp] 405 / 1e-138 AT1G22710 645 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Potri.002G106900 [exp] 261 / 7e-83 AT1G09960 674 / 0.0 sucrose transporter 4 (.1) Potri.010G093600 [exp] 214 / 8e-64 AT2G02860 816 / 0.0 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2) Potri.008G148100 [exp] 212 / 5e-63 AT2G02860 849 / 0.0 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009428 pacid=23149689 polypeptide=Lus10009428 locus=Lus10009428.g ID=Lus10009428.BGIv1.0 annot-version=v1.0 ATGCTTCAGGGACCGTGTCGAGCCCTATTGGCAGACTTGTCGGGGAAGAGTCCACGAAAGACGAGGGTGGCGAACGGCTTGTTCTCATTCTTCATGGCCG TCGGAAACATTCTCGGATACGCCGCCGGGTCGTATAGCCATCTCTACAAAATGCTCAAGTTCACCAAAACGGAAGCGTGTGATGTCTACTGTGCGAATCT GAAGACTTGCTTCATCATCTCCATAACTTTGCTCCTCGTTCTGACCGTTTTAGCCCTGTGGTACGTCAAGGAGAAGCAATGGTCCCCGGAGCAAGAAGCG ACGCCGGAAGACGGCGACGAATCATCTCCGACCACCGTACCAACATCCCAACCAATGCTCGGCGAGCTCTTGACGGCGATCCGGACGATGAAGCGGCCAA TGGGGATCCTCCTCCTCGTCACGTGCCTCAACTGGATCGGTTGGTTCCCGTTCCTGCTCTACGACACCGACTGGATGGGCAGAGAGATCTACGGCGGTGT CGGCGACACCGGCGCAAGCGACGCTAAGATCAAGGCCTACGGCCACGGAGTCCGCGCCGGATCTCTTGGTCTGCTCCTCAACTCGGTGGTCCTCGGAGTC ATGTCACTCGGCGTCGAGTCCATCGGGAAATGGGTCGGCGGCGTGAAGCGGCTGTGGGGAATTGTCAATTTTATCCTCGCCATCTGCCTGGCTTTGACGG TTGTAATCAGTAAAGTGGCGGAGGCTCACCGGGTAAATGACGATCCACCGACTCCCCCGTCCACCCCCCGTTTCGCCCGGGCTCCCCCCCCCGCCGTTAT CGCCGGCGCTTTGACTCTTTTCTCCGTGCTCGGGGTCCCACTTGCGATAACTTACAGCATCCCTTTTGCTATGGCTTCTATCTTTTCTCATACTACCGGT ACCGGACAAGGTTTATCATTGGCAGTTCTCAACCTCTCAATCGTCTTTCCTCAGATGATCGTATCGTTCGGGAGCGGACCATGGGACGCGCTATTCGGAG GAGGGAACTTACCGGCATTCGCATTCGGAGCAGTAGCGGCAACAGTGAGTGGAATACTAGCCCTAACTGTGCTACCATCACCACCTCCAGATGTTCCGGC AAACAAAGTTGCACTTGCGGGGTTCCATTAA
AA sequence Show only first row Show all	>Lus10009428 pacid=23149689 polypeptide=Lus10009428 locus=Lus10009428.g ID=Lus10009428.BGIv1.0 annot-version=v1.0 MLQGPCRALLADLSGKSPRKTRVANGLFSFFMAVGNILGYAAGSYSHLYKMLKFTKTEACDVYCANLKTCFIISITLLLVLTVLALWYVKEKQWSPEQEA TPEDGDESSPTTVPTSQPMLGELLTAIRTMKRPMGILLLVTCLNWIGWFPFLLYDTDWMGREIYGGVGDTGASDAKIKAYGHGVRAGSLGLLLNSVVLGV MSLGVESIGKWVGGVKRLWGIVNFILAICLALTVVISKVAEAHRVNDDPPTPPSTPRFARAPPPAVIAGALTLFSVLGVPLAITYSIPFAMASIFSHTTG TGQGLSLAVLNLSIVFPQMIVSFGSGPWDALFGGGNLPAFAFGAVAATVSGILALTVLPSPPPDVPANKVALAGFH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22710		SUT1, ATSUC2, S...	SUCROSE TRANSPORTER 1, ARABIDO...		Lus10009428 [exp]	0	1
AT3G54450			Major facilitator superfamily ...		Lus10039521 [exp]	2.4	0.9675
AT1G05060			unknown protein		Lus10035303 [exp]	5.5	0.9594
AT3G52790			peptidoglycan-binding LysM dom...		Lus10027407 [exp]	6.9	0.9540
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Lus10034652 [exp]	7.5	0.9386
AT1G17620			Late embryogenesis abundant (L...		Lus10037638 [exp]	7.5	0.9540
AT2G03550			alpha/beta-Hydrolases superfam...		Lus10019885 [exp]	7.5	0.9657
AT1G17620			Late embryogenesis abundant (L...		Lus10015622 [exp]	8.1	0.9599
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10032593 [exp]	9.8	0.9640
AT3G56850	bZIP	DPBF3, AREB3	ABA-responsive element binding...		Lus10028888 [exp]	11.7	0.9409
AT1G62710		BETAVPE, BETA-V...	beta vacuolar processing enzym...		Lus10032236 [exp]	12.5	0.9535

Compare expression of checked genes

Lus10009428 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.