Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34420 680 / 0 leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G17230 365 / 5e-110 Leucine-rich receptor-like protein kinase family protein (.1) AT3G24240 343 / 2e-101 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G63930 340 / 8e-101 Leucine-rich repeat protein kinase family protein (.1) AT5G48940 340 / 2e-100 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT2G33170 337 / 1e-99 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT4G20140 313 / 3e-90 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G49660 308 / 5e-90 XIP1 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT4G28650 307 / 1e-89 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT4G28490 302 / 7e-88 RLK5, HAESA RECEPTOR-LIKE PROTEIN KINASE 5, HAESA, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006067 [exp] 662 / 0 AT1G34420 371 / 1e-118 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10008849 [exp] 332 / 1e-97 AT1G73080 648 / 0.0 PEP1 receptor 1 (.1) Lus10018636 [exp] 328 / 6e-97 AT1G28440 1203 / 0.0 HAESA-like 1 (.1) Lus10011761 [exp] 321 / 7e-95 AT5G63930 913 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031108 [exp] 320 / 3e-94 AT5G62230 1422 / 0.0 ERECTA-like 1 (.1.2) Lus10036242 [exp] 317 / 4e-93 AT4G20270 1248 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Lus10011756 [exp] 318 / 1e-92 AT3G24240 1455 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10031689 [exp] 312 / 3e-91 AT5G62230 1437 / 0.0 ERECTA-like 1 (.1.2) Lus10036251 [exp] 305 / 2e-87 AT4G20140 1495 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G084800 [exp] 870 / 0 AT1G34420 753 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.013G114200 [exp] 849 / 0 AT1G34420 793 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.019G084700 [exp] 431 / 8e-140 AT1G34420 432 / 2e-140 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.016G055400 [exp] 405 / 1e-126 AT2G41820 1311 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G051700 [exp] 404 / 3e-126 AT2G41820 1343 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G175700 [exp] 333 / 9e-98 AT3G24240 1374 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.008G007600 [exp] 327 / 2e-96 AT1G73080 981 / 0.0 PEP1 receptor 1 (.1) Potri.011G139700 [exp] 325 / 2e-95 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.012G130400 [exp] 320 / 3e-94 AT5G62230 1412 / 0.0 ERECTA-like 1 (.1.2) Potri.001G053400 [exp] 319 / 3e-93 AT2G33170 1311 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10009429 pacid=23149703 polypeptide=Lus10009429 locus=Lus10009429.g ID=Lus10009429.BGIv1.0 annot-version=v1.0 ATGCCAACAAATTCTCTCCAAATCTTCATCTTCGTCTTCTTCTCCATTCCTTTCACAGCCTCCTCAAACCTCTCACCAAACCAAACCACAGCCATCACCA CCATAGCCGCCGTACTAACCAACAACTCCCAATCCGTCCCATGGAAGGACTTCTCCAACAACAACCCATGTTCATGGCGTGGAGTTTCATGTTCATCCGA CAATTCATCCATAACTTCCCTTTCCCTATCTGGGTTTGGTCTCTCTGCCTCAGATTTCCTCCCCCATGTCTGCAAGATCGAGTCTTTACAGTCTCTAGAT GTTTCCAACAACCGTCTGACCGAAATCCCAGATGGGTTCTTCTCCAATGGCGGCTGTGAGTTGAACTTGAGAGCTTTGAACTTTAGTAAAAACCAGCTGG TGGGTTCTTTGCCACTGGTTAAAAGGTTCACTGGGTTGGAAAGTTTGGATCTTTCTTTCAATTCCTTGAGTGGGGATGGTGTTGGTGGCTGGTTGGATGG GTTGGTTTCTTTGAAAAGATTGAATCTTGGGTTCAACCGGTTTAGTGGTGAGATTCCTCTGCTCAGGTTTCGAAATTCGACAGGTTTGGAGGAGATGATT CTGTCTGGGAATCTTTTTCATGGTGGAATCCCTAAGGAGATTGGAGGTTATGAGATGTTGAGAACAGTTGATTTCAGTGCTAATCTGCTTAGTGGTGAGA TTCCTGATGAGATTCGGAATCTTACTAAGCTGGAAGTTTTGATTCTGTCATCTAATAACTTGAGTGGAGAGATTCCGCCGGCAATTTCTGGTATCCAAAC TTTGACAAGGTTTGCAGCCCATCAGAATTGGTTCACCGGTCCGATTCCAAAAGGGTTAACCAGATTTCTAACGGCACTGGACTTGAGCTACAACAGCCTC ACCGGGTCGATCCCAGATGATCTTTTGTTACAACCACAGTTGACTTCTGTTGACTTGTCTTCCAATCAATTACAAGGCTCAATCCCTTCCGTGGAAGGGA TTGAGTCTTCATCATTGTTCAGGTTGAGGCTCGGAAACAATTCGCTGAACAGAACGATTCCTGAGTCGTTTGGTTTGCTTGGGGAGCTGACGTACTTGGA GCTTGATCACAATAGCTTGACTGGTGCAATCCCTGCTGATTTGGGTTCTTGTAGGAAGCTGGCTCTATTGGATTTGAGTGAGAATGAGTTGACCGGTGTC CTACCCGGTTCAATCGGTGGTCTGACCGAGCTGCAAGTGTTGAGGCTTCAGAACAACCGATTTGTTGGTCGGATCCCGGAGGGGTTCGACCAGCTGAGGA GCTTGTTCAAGCTCAACATTAGTTGGAACTCACTAGACGGTTCGATTCCTGATTCGTTGGTGAATTTGGGTCAGCTGACTCACTTGGCGTTGCAAGGGAA CCAGTTGACTGGGGTTATACCGGTTGATGTTGGTAAAATGGGTAATTTGATTGAGCTCCAGCTTGGTCAGAACCAACTTGAGGGTACAATTCCAGATATG CCTGTTAAGCTGCAGATTGCATTGAATCTCAGCAGCAACAATCTTCAAGGGAGTATACCGGACGGACTTTCGAAGCTGAGGGATTTGGAGATTCTCGACC TCTCGAATAACCAGTTTTTAGGCGAGATTCCGGAATTCCTTACCGAGTTGGGATCCTTGACGCAACTCTCACTGTCAAACAATCAGTTATCCGGAATCAT TCCACAATTCAAAGATTTTGTTACAGTCAACACAACTGGAAATGACAAACTTGTGGAGAGTCAAAAACCAGTTACGAAAAGAAAGAAATCATCATCAGTT GCCAAGGCAGCCAGTCTTGCAGCCACTCTCTCAGCAATCCTTGCTGTCTCGATCGTAGCCCTCGTCTTTTTAATCCTCTCGAGGCGCGCCCTCAAAGTCA ACCAAGTCAACAACTCCGAGCCAGGGGAAGCAGCAGCTTCTGATCATGTAAAACTCCTGACTTGCAGCGCAATCCATAGCTCGAATCTCGACTTCTTCAA GGCAATGGAAGCAGTCTCGGACCCTCGTAACGTTCTAGTCAGGACGAGATTCTGCACCTACTACAAGGCCACCATGCCTTCAGGAGCAATCTACCTGGTC AAGAAACTGAACCTGAGTGAGAAAATCTTCCTGATGAACAATTATAACAGGTTTTCTCAGGAACTCGACGTTCTGGCGAAATTGAGCAATTCGAATGTCA TGTCTCCCTTGGCCTATTCATTGACCGAAGGGACCGCTTACCTCTTCTACGAGAACGCTCCGATGGGATGTCTGTTCGATGTTCTTCATCATCAGAGGGA AAAACCGGTTCTCGATTGGCCTAGCAGGTATAGTATAGCTGTGGGAGTAGCTCAAGGTCTGGCTTCTCTGCATGGATTTCGGTATGGTCCGATTCTCTTG CTCGACTTGTCGAGCAAGAACGTTCTTTTGAAGTCTCTTAAGGAGCCGGTTGTTGGAGATATCGAGCTTTGTAAAGTCATTGATCCTTCGAAGAGTACTG GTAGCATTTCCACTGTTGCTGGCTCTGTGGGATACATCCCTCCAGAATATGCATACACAATGAGGGTGACAATGGCGGGGAATGTGTACAGTTTCGGGGT GATCCTGCTCGAACTGGTGACCGGGAAACCAGCAGTAAGCGGAGGGATCGAGTTGGCGAAATGGGCAGTCAGCAAGTCGAAGAATCAAGTGAAGTGGGAC GAGATAACCGACAACATATGGGGAGGAGGAGGCGGCTCAGTTGCTGTAAGAAGTCAGATGCTTTCTGTTCTTAAGGTTGCTCTCAGTTGCGTCAGTGTCT CCCCAGATTCGAGACCCAAGATGAAGAGCGTGTTAAGGATGATCCTCAATGCACGATGA
AA sequence Show only first row Show all	>Lus10009429 pacid=23149703 polypeptide=Lus10009429 locus=Lus10009429.g ID=Lus10009429.BGIv1.0 annot-version=v1.0 MPTNSLQIFIFVFFSIPFTASSNLSPNQTTAITTIAAVLTNNSQSVPWKDFSNNNPCSWRGVSCSSDNSSITSLSLSGFGLSASDFLPHVCKIESLQSLD VSNNRLTEIPDGFFSNGGCELNLRALNFSKNQLVGSLPLVKRFTGLESLDLSFNSLSGDGVGGWLDGLVSLKRLNLGFNRFSGEIPLLRFRNSTGLEEMI LSGNLFHGGIPKEIGGYEMLRTVDFSANLLSGEIPDEIRNLTKLEVLILSSNNLSGEIPPAISGIQTLTRFAAHQNWFTGPIPKGLTRFLTALDLSYNSL TGSIPDDLLLQPQLTSVDLSSNQLQGSIPSVEGIESSSLFRLRLGNNSLNRTIPESFGLLGELTYLELDHNSLTGAIPADLGSCRKLALLDLSENELTGV LPGSIGGLTELQVLRLQNNRFVGRIPEGFDQLRSLFKLNISWNSLDGSIPDSLVNLGQLTHLALQGNQLTGVIPVDVGKMGNLIELQLGQNQLEGTIPDM PVKLQIALNLSSNNLQGSIPDGLSKLRDLEILDLSNNQFLGEIPEFLTELGSLTQLSLSNNQLSGIIPQFKDFVTVNTTGNDKLVESQKPVTKRKKSSSV AKAASLAATLSAILAVSIVALVFLILSRRALKVNQVNNSEPGEAAASDHVKLLTCSAIHSSNLDFFKAMEAVSDPRNVLVRTRFCTYYKATMPSGAIYLV KKLNLSEKIFLMNNYNRFSQELDVLAKLSNSNVMSPLAYSLTEGTAYLFYENAPMGCLFDVLHHQREKPVLDWPSRYSIAVGVAQGLASLHGFRYGPILL LDLSSKNVLLKSLKEPVVGDIELCKVIDPSKSTGSISTVAGSVGYIPPEYAYTMRVTMAGNVYSFGVILLELVTGKPAVSGGIELAKWAVSKSKNQVKWD EITDNIWGGGGGSVAVRSQMLSVLKVALSCVSVSPDSRPKMKSVLRMILNAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34420			leucine-rich repeat transmembr...		Lus10009429 [exp]	0	1
AT5G10530			Concanavalin A-like lectin pro...		Lus10020446 [exp]	6.0	0.8047
AT1G76040		CPK29	calcium-dependent protein kina...		Lus10005619 [exp]	6.0	0.8104
AT5G05190			Protein of unknown function (D...		Lus10029013 [exp]	7.3	0.8013
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Lus10042239 [exp]	8.4	0.8053
AT3G48090		ATEDS1, EDS1	enhanced disease susceptibilit...		Lus10042937 [exp]	19.3	0.7746
AT1G69850		NTL1, ATNRT1:2	nitrate transporter 1:2 (.1)		Lus10013276 [exp]	22.4	0.6867
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Lus10022636 [exp]	26.6	0.8022
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Lus10003333 [exp]	28.4	0.8014
AT4G08850			Leucine-rich repeat receptor-l...		Lus10019036 [exp]	29.7	0.7732
AT2G17120		LYM2	lysm domain GPI-anchored prote...		Lus10014442 [exp]	30.3	0.7135

Compare expression of checked genes

Lus10009429 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.