Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55730 129 / 2e-33 ATCAX5 cation exchanger 5 (.1.2) AT3G13320 127 / 6e-33 ATCAX2, CAX2 cation exchanger 2 (.1) AT1G55720 119 / 8e-30 ATCAX6 cation exchanger 6 (.1) AT5G01490 80 / 3e-16 ATCAX4, CAX4 cation exchanger 4 (.1) AT2G38170 74 / 3e-14 RCI4, ATCAX1, CAX1 RARE COLD INDUCIBLE 4, cation exchanger 1 (.1.2.3) AT3G51860 72 / 9e-14 CAX1-LIKE, ATHCX1, ATCAX3, CAX3 cation exchanger 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006068 [exp] 246 / 2e-74 AT3G13320 516 / 1e-176 cation exchanger 2 (.1) Lus10009431 [exp] 227 / 3e-71 AT3G13320 404 / 3e-139 cation exchanger 2 (.1) Lus10034853 [exp] 137 / 2e-35 AT1G55730 575 / 0.0 cation exchanger 5 (.1.2) Lus10033396 [exp] 135 / 2e-35 AT1G55730 571 / 0.0 cation exchanger 5 (.1.2) Lus10032889 [exp] 124 / 8e-32 AT3G13320 434 / 7e-151 cation exchanger 2 (.1) Lus10027136 [exp] 118 / 2e-29 AT3G13320 594 / 0.0 cation exchanger 2 (.1) Lus10002490 [exp] 79 / 5e-16 AT3G51860 578 / 0.0 cation exchanger 3 (.1) Lus10004819 [exp] 79 / 1e-15 AT2G38170 579 / 0.0 RARE COLD INDUCIBLE 4, cation exchanger 1 (.1.2.3) Lus10027791 [exp] 76 / 8e-15 AT3G51860 575 / 0.0 cation exchanger 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G249200 [exp] 135 / 7e-36 AT1G55730 573 / 0.0 cation exchanger 5 (.1.2) Potri.001G469800 [exp] 123 / 2e-31 AT1G55730 630 / 0.0 cation exchanger 5 (.1.2) Potri.011G166900 [exp] 115 / 1e-28 AT3G13320 627 / 0.0 cation exchanger 2 (.1) Potri.006G099900 [exp] 77 / 3e-15 AT3G51860 563 / 0.0 cation exchanger 3 (.1) Potri.009G045800 [exp] 76 / 4e-15 AT3G51860 495 / 9e-174 cation exchanger 3 (.1) Potri.016G115500 [exp] 76 / 5e-15 AT3G51860 570 / 0.0 cation exchanger 3 (.1) Potri.001G251200 [exp] 72 / 1e-13 AT3G51860 490 / 7e-172 cation exchanger 3 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009430 pacid=23149687 polypeptide=Lus10009430 locus=Lus10009430.g ID=Lus10009430.BGIv1.0 annot-version=v1.0 ATGACGAGGATCTCCAGTCAACTCCTTCTGGATCATCATAGTGATAATGCAGTCGCCGTCGTCGACAGTTTGTGGCCGGAGTTTGTTCTGGGGAGTGTCT GTACTGTGTTGCTGGGAGCCAGAATCAAACTGCTGCTGCCATTTGGTCCTCTGGCTATCATCGTCAATTACTTCTATGGAGATCCTGGATGGGTGTTCTT CCTCAGCTTGTTAGGAATAACACCTCTGGCTGAGAGTCTAGGCTATGCAACCGACTGGTGGTCTGTTAAATGCGATGTTTGGAAATGCAACGGAGATGAT CGTGTTTTCGCATTGAAGAGTGGAATGATAAGAGTCATTCAGCAGTCTTTGTTAGGATCAATCTTATCGAATTTGCTCATGGTTCTTGGATGTGCCTTTT TCGTCGGAGGAATTGTTCATCATGATAAGCAGGTCCAGGTTTTCAACAAGGGAGCGTCGGAATCATCGCACTTGTCGACGGGTTTCATCAACGTGATATT GATTTCGATAGCCGGGAACTCTGCTGCATATGCCACAATCATCATGTTAGCCATTAAAGATAAGCAAGATATAACTCTTGGCGTCGCCATTGGATCATCA ACTCAGATAGCCATGTTCGCGGTAAGATCACAAACTCTTGTGACTAAATTGCCAGCAAACCAAGCTAATAACTCTCTGGTGGCCGAAAAAATTGCAGATA CCGTTCTATGTAATGGTCGGATGGCTGGTAGATCAACCGATGGACTTGAACTTCCATCTTTTCGAGACGGCTACCCTATTCATCACTGTGGTGATTGTGG CATTTACACTACAGGTATAAAGGTGTTCATAATATTCATATTCACTGTCCTTTTGAAGCAACTTGTTGCTGAAGAAGGAACATCAAGTTACTTTAAAGGA TTGATGCTGATGCTTTGCTATTCTGTCGTCGGGGCGAGTTTCTATGTACATACCGATGGCCACAGAGGAAAAACGGTTCTTTCTGGAAAAAAATTCGTAA TTTATACGGATAGAACGATGACACAGATAAGTAGATTACTGTTCTTGTTTGATCCAAGCAACACACAGTTTTGA
AA sequence Show only first row Show all	>Lus10009430 pacid=23149687 polypeptide=Lus10009430 locus=Lus10009430.g ID=Lus10009430.BGIv1.0 annot-version=v1.0 MTRISSQLLLDHHSDNAVAVVDSLWPEFVLGSVCTVLLGARIKLLLPFGPLAIIVNYFYGDPGWVFFLSLLGITPLAESLGYATDWWSVKCDVWKCNGDD RVFALKSGMIRVIQQSLLGSILSNLLMVLGCAFFVGGIVHHDKQVQVFNKGASESSHLSTGFINVILISIAGNSAAYATIIMLAIKDKQDITLGVAIGSS TQIAMFAVRSQTLVTKLPANQANNSLVAEKIADTVLCNGRMAGRSTDGLELPSFRDGYPIHHCGDCGIYTTGIKVFIIFIFTVLLKQLVAEEGTSSYFKG LMLMLCYSVVGASFYVHTDGHRGKTVLSGKKFVIYTDRTMTQISRLLFLFDPSNTQF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55730		ATCAX5	cation exchanger 5 (.1.2)		Lus10009430 [exp]	0	1
AT3G19340			Protein of unknown function (D...		Lus10035127 [exp]	1.0	0.8986
AT4G12010			Disease resistance protein (TI...		Lus10015648 [exp]	3.0	0.8539
AT2G21370		XK1, XK-1	XYLULOSE KINASE 1, xylulose ki...		Lus10017967 [exp]	6.0	0.8833
AT3G52070			unknown protein		Lus10039603 [exp]	8.2	0.8675
					Lus10035197 [exp]	8.8	0.7968
AT4G35640		ATSERAT3;2	serine acetyltransferase 3;2 (...		Lus10007424 [exp]	9.4	0.7920
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039429 [exp]	10.5	0.8691
AT1G31170		ATSRX	sulfiredoxin (.1.2.3.4)		Lus10038354 [exp]	10.6	0.8554
AT5G36930			Disease resistance protein (TI...		Lus10000738 [exp]	11.0	0.8181
AT3G48200			unknown protein		Lus10008827 [exp]	14.0	0.8415

Compare expression of checked genes

Lus10009430 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.