Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13320 349 / 8e-118 ATCAX2, CAX2 cation exchanger 2 (.1) AT1G55730 346 / 2e-116 ATCAX5 cation exchanger 5 (.1.2) AT1G55720 319 / 8e-106 ATCAX6 cation exchanger 6 (.1) AT5G01490 214 / 2e-65 ATCAX4, CAX4 cation exchanger 4 (.1) AT2G38170 210 / 2e-63 RCI4, ATCAX1, CAX1 RARE COLD INDUCIBLE 4, cation exchanger 1 (.1.2.3) AT3G51860 201 / 3e-60 CAX1-LIKE, ATHCX1, ATCAX3, CAX3 cation exchanger 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006068 [exp] 606 / 0 AT3G13320 516 / 1e-176 cation exchanger 2 (.1) Lus10033396 [exp] 383 / 1e-129 AT1G55730 571 / 0.0 cation exchanger 5 (.1.2) Lus10034853 [exp] 383 / 2e-128 AT1G55730 575 / 0.0 cation exchanger 5 (.1.2) Lus10027136 [exp] 331 / 4e-110 AT3G13320 594 / 0.0 cation exchanger 2 (.1) Lus10032889 [exp] 306 / 2e-101 AT3G13320 434 / 7e-151 cation exchanger 2 (.1) Lus10009430 [exp] 226 / 6e-71 AT1G55730 128 / 2e-33 cation exchanger 5 (.1.2) Lus10027791 [exp] 202 / 2e-60 AT3G51860 575 / 0.0 cation exchanger 3 (.1) Lus10002490 [exp] 200 / 1e-59 AT3G51860 578 / 0.0 cation exchanger 3 (.1) Lus10004819 [exp] 199 / 2e-59 AT2G38170 579 / 0.0 RARE COLD INDUCIBLE 4, cation exchanger 1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G249200 [exp] 380 / 3e-130 AT1G55730 573 / 0.0 cation exchanger 5 (.1.2) Potri.001G469800 [exp] 339 / 5e-114 AT1G55730 630 / 0.0 cation exchanger 5 (.1.2) Potri.011G166900 [exp] 336 / 1e-112 AT3G13320 627 / 0.0 cation exchanger 2 (.1) Potri.016G115500 [exp] 220 / 2e-67 AT3G51860 570 / 0.0 cation exchanger 3 (.1) Potri.006G099900 [exp] 216 / 4e-66 AT3G51860 563 / 0.0 cation exchanger 3 (.1) Potri.009G045800 [exp] 203 / 4e-61 AT3G51860 495 / 9e-174 cation exchanger 3 (.1) Potri.001G251200 [exp] 201 / 3e-60 AT3G51860 490 / 7e-172 cation exchanger 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01699 [flax] [poplar] Na_Ca_ex Sodium/calcium exchanger protein
Representative CDS sequence Show only first row Show all	>Lus10009431 pacid=23149685 polypeptide=Lus10009431 locus=Lus10009431.g ID=Lus10009431.BGIv1.0 annot-version=v1.0 ATGCCGCTCATGGAGAACTTGGGACTAGTAAGCGAGGAGTTGGATTCCAGCTCGTTGGAATCAGGATACCGCAATGTGGAGCTGGCAAGGATCTCCGGTC AGCTCCATCTGGATCATCATCATCGTGATAATGCCGCCGCTGTCTCCCTCGCCATCGGCAGTTCGTGGCCGGAGTTTGTTCTGGGGAGTGTTTGCACTGT ATTGCTCAAAGCCAGGATCAAAATATTGCTGCCATTTGGTCCTCTTGCTATCTTCGTCAATTACTTCTATGGAGACCCCGGATGGGTATTCTTCCTCAGC TTGTTAGGAATAACACCACTGGCAGAACGTCTAGGCTATGCAACCGAGCAGATTGCTTACTACTCGGGACCAACAGTTGGTGGTCTGTTGAATGCAACGT TTGGAAATGCAACGGAGATGATTGTGTCGGTTTTCGCATTGAAGAGTGGAATGATTAGAGTCATTCAGCAGTCTTTGTTAGGATCCATCTTATCGAATCT ACTCATGGTCCTTGGATGTGCCTTCTTCGTCGGAGGAATCGTTCATCACGATAAGAAGGTTCAGGTTTTCAACAAGGCAGCTGCAGCTGTGGATTGCGGG TTTTTATTGGTCTCCGTGATGGGTATCATCATACCGGCTGTTCTTCATGCAACGAAAACTGAGGTTGAGCTTGGGAAATCGGAGCTAGCACTTTCGAGAT TCAGCAGTTGCATGATGCTTCTTGCATATGCTGCTTACCTGTTCTTCCAGCTTAAAAGCCATCAAAGCCTCTACAATCCTATTAATCAGGAGGATGTTCT AGACGAAGAACGACACGTTAAAGAAGAAGAGGAGGTGCCTGAAATTACGAAATGGGAAGCGATTTCTTGGCTCGCAATTCTAACCCTTTGGGTTTCTGTG CTGTCTGGGTATCTAGTTGATGCTATTCAGGGAGCGTCCGAATCGTCACACTTGTCAATGGGTTTCATCAACGTGATCTTGATTCCGATAGCCGGAAACT CCGCTGCATACGCCACAACCATCATGTTTGCCATTAAAGATAAGCAAGATATAACTCTTGGGGTCGCCATTGGATCATCGACTCAGATAGCCATGTTTGC GGTAAGACCAGAAACTCTTTCGTCTCCGGCCAACTACGACTAA
AA sequence Show only first row Show all	>Lus10009431 pacid=23149685 polypeptide=Lus10009431 locus=Lus10009431.g ID=Lus10009431.BGIv1.0 annot-version=v1.0 MPLMENLGLVSEELDSSSLESGYRNVELARISGQLHLDHHHRDNAAAVSLAIGSSWPEFVLGSVCTVLLKARIKILLPFGPLAIFVNYFYGDPGWVFFLS LLGITPLAERLGYATEQIAYYSGPTVGGLLNATFGNATEMIVSVFALKSGMIRVIQQSLLGSILSNLLMVLGCAFFVGGIVHHDKKVQVFNKAAAAVDCG FLLVSVMGIIIPAVLHATKTEVELGKSELALSRFSSCMMLLAYAAYLFFQLKSHQSLYNPINQEDVLDEERHVKEEEEVPEITKWEAISWLAILTLWVSV LSGYLVDAIQGASESSHLSMGFINVILIPIAGNSAAYATTIMFAIKDKQDITLGVAIGSSTQIAMFAVRPETLSSPANYD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13320		ATCAX2, CAX2	cation exchanger 2 (.1)		Lus10009431 [exp]	0	1
AT1G21870		GONST5	golgi nucleotide sugar transpo...		Lus10025645 [exp]	2.0	0.8722
AT1G06780		GAUT6	galacturonosyltransferase 6 (....		Lus10018773 [exp]	3.7	0.8546
AT3G05520			Subunits of heterodimeric acti...		Lus10029890 [exp]	5.7	0.8513
AT3G60030	SBP	SPL12	squamosa promoter-binding prot...		Lus10004523 [exp]	6.2	0.8520
AT4G00740		QUA3	QUASIMODO 3, S-adenosyl-L-meth...		Lus10041363 [exp]	8.5	0.8462
AT2G34250			SecY protein transport family ...		Lus10031399 [exp]	10.2	0.8175
AT1G48110		ECT7	evolutionarily conserved C-ter...		Lus10017111 [exp]	10.2	0.8200
AT3G07190			B-cell receptor-associated pro...		Lus10038188 [exp]	12.0	0.8203
AT4G00740		QUA3	QUASIMODO 3, S-adenosyl-L-meth...		Lus10018848 [exp]	13.6	0.8511
AT1G76400			Ribophorin I (.1)		Lus10025159 [exp]	14.1	0.8385

Compare expression of checked genes

Lus10009431 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.